BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0516700 Os01g0516700|015-014-C10
         (313 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73740.1  | chr1:27734451-27736008 FORWARD LENGTH=432          139   2e-33

>AT1G73740.1 | chr1:27734451-27736008 FORWARD LENGTH=432
          Length = 431

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 126/269 (46%), Gaps = 26/269 (9%)

Query: 68  ASDPDPLRVAFACGGAGGHVYAAIALADELHASLPSSASLFLGAPPPSLESDAAASAPYP 127
           +++   LRV  + GG  GH+ +A+A+ DEL ++ P +  LF+G P  S+ES    SA + 
Sbjct: 47  SNETSGLRVVISAGGTAGHISSALAIGDELKSADPLARILFIGFPN-SMESTTVPSAGFD 105

Query: 128 FAPI--------------------PRCLPHAVLDAALHLRRFRPHVLVATGGXXXXXXXX 167
           F+ I                    P  L  +  ++   LR  +P +++ TGG        
Sbjct: 106 FSTISTVGSSSSRPFLCFTSFLKFPLRLIQSTFESYKILRELKPQIVIGTGGHASFPVCF 165

Query: 168 XXXXXGVPFVIQDQDXXXXXXXXXXXXXXXXIFLGFNAPVRLLPKR---KCAVYGNPVRM 224
                   FVIQ+QD                IF  FN  V  LPKR   KC VYGNP+R 
Sbjct: 166 AAVISRTKFVIQEQDSIPGTTNWILSFFADTIFAPFNCTVTNLPKRVAAKCVVYGNPIRQ 225

Query: 225 SIRKCRISKADAMASFFPRIXXXXXXXXXXXXXXXXXXXSPEINVALLNMYYEMLRERRN 284
           ++R+   SK  A  SFF +                    +  IN+ALLN Y ++L E  N
Sbjct: 226 TLRRYS-SKGAARVSFFGQWAGAVSEPKVVLLLGGSLGANA-INIALLNCYSQLLSEHEN 283

Query: 285 RYIIWQTGPEGFCEMESLVRSHRRLLLTP 313
            + +WQTG E F EM+SLVRSH RL L+P
Sbjct: 284 WFFVWQTGVEAFDEMDSLVRSHPRLFLSP 312



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,093,094
Number of extensions: 165534
Number of successful extensions: 664
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)