BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0513700 Os01g0513700|AK068877
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51160.1  | chr1:18950057-18951560 FORWARD LENGTH=170          238   1e-63
AT5G02280.1  | chr5:469377-470129 FORWARD LENGTH=142               66   9e-12

>AT1G51160.1 | chr1:18950057-18951560 FORWARD LENGTH=170
          Length = 169

 Score =  238 bits (607), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 107/148 (72%), Positives = 134/148 (90%), Gaps = 1/148 (0%)

Query: 32  NAQVLYVFNRGGVCLLYREWHRPLRTLDPTQDQKLMFGLLFSLRSFTAKIDPTTAEKGNL 91
           NA ++YVFNR GVCLLY+EW+RPL TL+P QD KLMFGLLFSL+S TAK+DP  A+KGNL
Sbjct: 22  NAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNL 81

Query: 92  GVPLLPGQGCSFYSFKTNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIYNLYVEYVV 151
           GVP LPGQGCSF+SF+TNTYKL+F+E+PSGIK+IL+THP+TGD R++LK+IY+LYVEYVV
Sbjct: 82  GVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVV 141

Query: 152 KNPLYAPGTPINRCELFNKHLDQYVKTL 179
           KNP+Y+PG+PI + ELFN  LDQYV+++
Sbjct: 142 KNPIYSPGSPI-KSELFNTALDQYVRSI 168



>AT5G02280.1 | chr5:469377-470129 FORWARD LENGTH=142
          Length = 141

 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 16/143 (11%)

Query: 36  LYVFNRGGVCLLYREWHRPLRTLDPTQDQKLMFGLLFSLRSFTAKIDPTTAEKGNLGVPL 95
           LY+ N+ G  + Y++     R    T D   +  L  S+ + + ++ P     G  G+ L
Sbjct: 7   LYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPV---NGCSGIEL 61

Query: 96  LPGQGCSFYSFKTNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIYNLYVEYVVKNPL 155
           L          + +T+ L+  +S  G K  ++  P T      L++IY LY +YV+KNP 
Sbjct: 62  L----------EADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPF 111

Query: 156 YAPGTPINRCELFNKHLDQYVKT 178
           Y    PI RCELF+ +L Q V++
Sbjct: 112 YEIEMPI-RCELFDINLTQAVQS 133



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,828,140
Number of extensions: 152204
Number of successful extensions: 217
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)