BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0511600 Os01g0511600|AK072161
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32080.1  | chr1:11537572-11539756 REVERSE LENGTH=513          265   2e-71

>AT1G32080.1 | chr1:11537572-11539756 REVERSE LENGTH=513
          Length = 512

 Score =  265 bits (677), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/194 (67%), Positives = 156/194 (80%)

Query: 99  SLVGIAHLLVSLGIVLASDKFLKQAFAAASIKFPSALFGMFCVFSVLVVLDAFAPALAKG 158
           +++ I+HLLVSLGI+LA+D FLKQAF AASIKFPSALFGMFC+FSVL++ D+  PA A G
Sbjct: 92  NVIAISHLLVSLGIILAADYFLKQAFVAASIKFPSALFGMFCIFSVLMIFDSVVPAAANG 151

Query: 159 FMDFFEPATLFIQRWLPLFYVPSLVVLPLAVRDVPAASGLKIFLIIFGGWFASLMVAGYT 218
            M+FFEPA LFIQRWLPLFYVPSLVVLPL+VRD+PAASG+KI  I+ GGW ASL VAGYT
Sbjct: 152 LMNFFEPAFLFIQRWLPLFYVPSLVVLPLSVRDIPAASGVKICYIVAGGWLASLCVAGYT 211

Query: 219 ALTVRKIVQTQLIPAEPMSKPSPFATLEXXXXXXXXXXXXXXXYVNPTALGTTARTCLPF 278
           A+ VRK+V+T++  AEPM+KPSPF+TLE                  P +LGT+ART LPF
Sbjct: 212 AIAVRKMVKTEMTEAEPMAKPSPFSTLELWSWSGIFVVSFVGALFYPNSLGTSARTSLPF 271

Query: 279 LLASTVLGYMVGSG 292
           LL+STVLGY+VGSG
Sbjct: 272 LLSSTVLGYIVGSG 285



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,615,199
Number of extensions: 150508
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)