BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0511300 Os01g0511300|AK069825
(385 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G19006.1 | chr4:10409349-10411347 REVERSE LENGTH=387 579 e-166
AT5G45620.1 | chr5:18501590-18503868 FORWARD LENGTH=387 560 e-160
AT3G02200.2 | chr3:406692-408919 FORWARD LENGTH=418 52 8e-07
>AT4G19006.1 | chr4:10409349-10411347 REVERSE LENGTH=387
Length = 386
Score = 579 bits (1492), Expect = e-166, Method: Compositional matrix adjust.
Identities = 271/384 (70%), Positives = 325/384 (84%)
Query: 2 ALQYVEAQRQARPXXXXXXXXXXXXXQRKLWHQLTLKLDHFLQLPAAQTGDTIIQLYNNF 61
ALQY+E+Q+ A P Q+KLWHQLTLKL+ F+ L Q GD +IQLYNNF
Sbjct: 3 ALQYLESQKNAHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALSVFQAGDALIQLYNNF 62
Query: 62 ISDFETKINLLKLAHFAVIASRQYPDKDAAISFLEGVTAKLRETRERRIDEPVLYVKMQI 121
I+DFET+INLLKLAHFAV+ SRQYP+K+AA+S+LEGV KL+ T+E RI+EP+ Y++ QI
Sbjct: 63 ITDFETRINLLKLAHFAVVVSRQYPEKEAAVSYLEGVIEKLKATKESRINEPISYIETQI 122
Query: 122 AAINLEKGDQKECKKLLDEGKSTLDSMTDVDPTVHASFYWISSQYHKACQEFAEFYKNAL 181
A LE+GDQKECKK+LD+GKS LDSMTD+DP+V+A+F+W+SSQYHK QEF+EFYKNAL
Sbjct: 123 ALFKLEQGDQKECKKILDDGKSLLDSMTDIDPSVYANFFWVSSQYHKVRQEFSEFYKNAL 182
Query: 182 LYLAYTTVESLSESFKXXXXXXXXXXXXXXXNIYNFGELLAHPIINSLIGTKVEWVYHML 241
LYLAYT+V+SLSESFK NIYNFGELLAHPI+ SL+GT VEW+YH+L
Sbjct: 183 LYLAYTSVDSLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHIL 242
Query: 242 QAFNTGNLALYQELCKVHNAALSAQPALVQNERKLLEKINILCLMEIIFTRPSEDRTIPL 301
QAFN G+L YQELC+VHNA+LSAQPALV+NE+KLLEKINILCL+EIIF+RP+EDRTIPL
Sbjct: 243 QAFNHGDLVQYQELCRVHNASLSAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPL 302
Query: 302 SVIAERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRERL 361
SVIAERTKLSI DVE+LLMKSLSVHLIEGI+D+V+ TV+VSW QPRVLGIPQ+K+LR++L
Sbjct: 303 SVIAERTKLSIEDVEHLLMKSLSVHLIEGILDQVNGTVYVSWAQPRVLGIPQIKSLRDQL 362
Query: 362 DAWVGKVHTTLLSVEAETPDLVAA 385
D+WV KVHTTLLSVEAETPDLVAA
Sbjct: 363 DSWVDKVHTTLLSVEAETPDLVAA 386
>AT5G45620.1 | chr5:18501590-18503868 FORWARD LENGTH=387
Length = 386
Score = 560 bits (1443), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/384 (68%), Positives = 318/384 (82%)
Query: 2 ALQYVEAQRQARPXXXXXXXXXXXXXQRKLWHQLTLKLDHFLQLPAAQTGDTIIQLYNNF 61
ALQY+E+ + P Q+KLWHQLTLKL+ F+ L Q GD +IQ Y+NF
Sbjct: 3 ALQYLESLKNTHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALAVFQAGDALIQFYHNF 62
Query: 62 ISDFETKINLLKLAHFAVIASRQYPDKDAAISFLEGVTAKLRETRERRIDEPVLYVKMQI 121
I+DFETKINLLKLAHFAV+ SRQY +K+AA+S+LE V KLR T+E RI EP++Y++ Q
Sbjct: 63 ITDFETKINLLKLAHFAVVVSRQYSEKEAAVSYLESVIEKLRATKEPRITEPIIYIETQK 122
Query: 122 AAINLEKGDQKECKKLLDEGKSTLDSMTDVDPTVHASFYWISSQYHKACQEFAEFYKNAL 181
A LE+GDQKECKK+LD+GKS+LDSMTD+DP+V+A+FYW+SSQYHK QEF++FYK+AL
Sbjct: 123 ALFKLEQGDQKECKKILDDGKSSLDSMTDIDPSVYANFYWVSSQYHKCRQEFSDFYKSAL 182
Query: 182 LYLAYTTVESLSESFKXXXXXXXXXXXXXXXNIYNFGELLAHPIINSLIGTKVEWVYHML 241
LYLAYT+VE LSESFK NIYNFGELLAHPI+ SL+GT VEW+YH+L
Sbjct: 183 LYLAYTSVEDLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYHIL 242
Query: 242 QAFNTGNLALYQELCKVHNAALSAQPALVQNERKLLEKINILCLMEIIFTRPSEDRTIPL 301
QAFN G+L YQELC+VHNA+L AQPALV+NE+KLLEKINILCL+EIIF+RP+EDRTIPL
Sbjct: 243 QAFNHGDLVQYQELCRVHNASLIAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTIPL 302
Query: 302 SVIAERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKALRERL 361
S+IAERTKLSI DVE+LLMKSLSVHLIEGIID+V+ T++VSW QPRVLGIPQ+KALR++L
Sbjct: 303 SIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVNGTIYVSWAQPRVLGIPQIKALRDQL 362
Query: 362 DAWVGKVHTTLLSVEAETPDLVAA 385
D+WV KVHTTLLSVEAETPDLVAA
Sbjct: 363 DSWVDKVHTTLLSVEAETPDLVAA 386
>AT3G02200.2 | chr3:406692-408919 FORWARD LENGTH=418
Length = 417
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 237 VYHMLQAFNTGNLALYQELCKVHNAALSAQPALVQNERKLLEKINILCLMEIIFTRPSED 296
VY +L+ F T L Y E ++ L Q + NE + K+ +L L+++ E
Sbjct: 259 VYQLLKIFLTQRLNAYTEFQNANSGFL--QSYGLSNE-DCVTKMRLLSLVDL---ASDES 312
Query: 297 RTIPLSVIAERTKLSISDVEYLLMKSLSVHLIEGIIDEVDSTVHVSWVQPRVLGIPQVKA 356
IP + I + +++ DVE ++K+++ LIE +D+++ + VS R G Q ++
Sbjct: 313 GKIPYTSIKDTLQVNEQDVELWIVKAITAKLIECKMDQMNQVLIVSRSSEREFGTKQWQS 372
Query: 357 LRERLDAWVGKVHTTLLSVEA 377
LR +L W + + + ++E+
Sbjct: 373 LRTKLATWKDNISSIITTIES 393
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,165,227
Number of extensions: 267209
Number of successful extensions: 630
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 3
Length of query: 385
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 285
Effective length of database: 8,364,969
Effective search space: 2384016165
Effective search space used: 2384016165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)