BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0511200 Os01g0511200|AK058499
(266 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G05400.1 | chr4:2741256-2742008 FORWARD LENGTH=251 219 1e-57
AT4G21140.1 | chr4:11277491-11278222 REVERSE LENGTH=244 197 5e-51
>AT4G05400.1 | chr4:2741256-2742008 FORWARD LENGTH=251
Length = 250
Score = 219 bits (558), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 126/243 (51%), Positives = 160/243 (65%), Gaps = 16/243 (6%)
Query: 32 HQLQQHAPVSGTAKGKAKLKSGQQLKRNTIGAKKGGAPSTXXXXXXXXXXXEAIE---RI 88
+ L Q SGT KGKAKLK+GQ LKRN + KK EA++ RI
Sbjct: 16 YHLIQRCSASGTPKGKAKLKTGQPLKRNKLSIKK-----GGGGGGAPVEGEEAVKGKGRI 70
Query: 89 T----QIAESCLNASTPLRHLSPXXXXXXXXXXXXGLISKERQRELDLAK-AKAKSKGTR 143
+ ++ E CLNA P+R+L+P GLISKE+QR++++ K A S G
Sbjct: 71 SDEKQKLYEQCLNAPCPVRYLTPQEIEREAQREKLGLISKEKQRDMEIQKKGGAASMGVT 130
Query: 144 EGDGGRVLMGPPGLDYISLGLVDEDAIPKYELTVEDGRRLAKQYSQVLMRRHRARQTAES 203
+ + +G PGLDYISLG+ + + +PKY+LT EDG RLAK+YS+VLMR HR R+ AE+
Sbjct: 131 DEP---MRIGTPGLDYISLGIFEAEELPKYKLTEEDGERLAKEYSKVLMREHRERRAAET 187
Query: 204 SLLSLKKEAIAALPEKLRAAAMIPDMTPFPANRYMATLTPPIEGYIEKVRDAAKKYSVKE 263
+LL+LKK AI ALPE L+ AA+ PD+TPFPANR MATLTPPIEGY+EKV DAAKK S KE
Sbjct: 188 ALLNLKKSAIEALPENLKKAALEPDLTPFPANRGMATLTPPIEGYLEKVMDAAKKSSSKE 247
Query: 264 KLR 266
KLR
Sbjct: 248 KLR 250
>AT4G21140.1 | chr4:11277491-11278222 REVERSE LENGTH=244
Length = 243
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 147/245 (60%), Gaps = 27/245 (11%)
Query: 32 HQLQQHAPVSGTAKGKAKLKSGQQLKRNTIGAKKGGAPSTXXXXXXXXXXXEAIERITQI 91
+ L Q SGT KGK+KLK+GQ LKRN + KK E + +I
Sbjct: 16 YNLLQKCYASGTPKGKSKLKTGQSLKRNKLTIKK------GGGNGGGRGGDEVDKGKGRI 69
Query: 92 AESCLNASTPLRHLSPXXXXXXXXXXXXGLISKERQRELDLAKAKAKSKGTREGDGGRVL 151
++ C+NA P+R+L P GLISK RQ+E+D K GG
Sbjct: 70 SDQCINAPCPVRYLRPKEREREARREKLGLISKARQKEIDFQK-----------KGGSFT 118
Query: 152 MG---------PPGLDYISLGLVDEDAIPKYELTVEDGRRLAKQYSQVLMRRHRARQTAE 202
MG PGLDYISLG+ ED +PKY++TVEDG RLAK+YS+VLMR HRAR+ AE
Sbjct: 119 MGVTTAPMRIGTPGLDYISLGIFTEDELPKYKVTVEDGIRLAKEYSRVLMREHRARRVAE 178
Query: 203 SSLLSLKKEAIAALPEKLRAAAMIPDMTPFPANRYMATLTPPIEGYIEKVRD-AAKKYSV 261
SL+ ++ A+ ALPE L+ AA++ D+TPFP +R ATLTPPIEGY+E++ + AA+K S
Sbjct: 179 ISLMKMRNAAVEALPENLKKAALVRDLTPFPVSRGTATLTPPIEGYLERIMNAAARKSSG 238
Query: 262 KEKLR 266
KEKLR
Sbjct: 239 KEKLR 243
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,835,844
Number of extensions: 173502
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 2
Length of query: 266
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 169
Effective length of database: 8,447,217
Effective search space: 1427579673
Effective search space used: 1427579673
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)