BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0391100 Os01g0391100|AK121200
         (68 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60790.1  | chr5:24453760-24455767 REVERSE LENGTH=596           55   9e-09
AT3G54540.1  | chr3:20190393-20192564 FORWARD LENGTH=724           54   2e-08
AT1G64550.1  | chr1:23968850-23973369 FORWARD LENGTH=716           52   7e-08

>AT5G60790.1 | chr5:24453760-24455767 REVERSE LENGTH=596
          Length = 595

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/28 (85%), Positives = 27/28 (96%)

Query: 40  RVRIALARALFMNPTILLLDEPTNHLDM 67
           R+RIALARALF+ PTILLLDEPTNHLD+
Sbjct: 218 RMRIALARALFIMPTILLLDEPTNHLDL 245



>AT3G54540.1 | chr3:20190393-20192564 FORWARD LENGTH=724
          Length = 723

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/28 (78%), Positives = 27/28 (96%)

Query: 40  RVRIALARALFMNPTILLLDEPTNHLDM 67
           R+RI+LARALF+ PT+LLLDEPTNHLD+
Sbjct: 325 RMRISLARALFVQPTLLLLDEPTNHLDL 352



>AT1G64550.1 | chr1:23968850-23973369 FORWARD LENGTH=716
          Length = 715

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/28 (78%), Positives = 26/28 (92%)

Query: 40  RVRIALARALFMNPTILLLDEPTNHLDM 67
           R+RIALARALF+ P +LLLDEPTNHLD+
Sbjct: 345 RMRIALARALFIEPDLLLLDEPTNHLDL 372



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.144    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,398,325
Number of extensions: 29973
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 11,106,569
Length adjustment: 40
Effective length of query: 28
Effective length of database: 10,009,929
Effective search space: 280278012
Effective search space used: 280278012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 105 (45.1 bits)