BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0380700 Os01g0380700|Os01g0380700
(120 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15080.1 | chr5:4886414-4888555 FORWARD LENGTH=494 64 2e-11
AT3G28690.2 | chr3:10755481-10757494 FORWARD LENGTH=454 64 2e-11
AT3G01300.1 | chr3:90817-93335 REVERSE LENGTH=491 63 4e-11
AT1G26970.1 | chr1:9359826-9361666 FORWARD LENGTH=413 60 2e-10
AT2G39660.1 | chr2:16531943-16533601 FORWARD LENGTH=396 59 6e-10
AT5G02290.1 | chr5:470387-472397 REVERSE LENGTH=390 59 6e-10
AT2G28930.1 | chr2:12424957-12426565 FORWARD LENGTH=424 55 6e-09
AT2G02800.1 | chr2:796889-799250 REVERSE LENGTH=427 55 7e-09
AT1G07570.3 | chr1:2331369-2333589 REVERSE LENGTH=425 55 8e-09
AT1G69790.1 | chr1:26266838-26268818 FORWARD LENGTH=388 53 3e-08
AT3G55450.2 | chr3:20558129-20559963 FORWARD LENGTH=427 53 4e-08
AT1G14370.1 | chr1:4915859-4917959 FORWARD LENGTH=427 50 2e-07
AT4G35600.2 | chr4:16896448-16898714 FORWARD LENGTH=421 46 4e-06
AT1G76360.1 | chr1:28643242-28646483 REVERSE LENGTH=485 45 1e-05
>AT5G15080.1 | chr5:4886414-4888555 FORWARD LENGTH=494
Length = 493
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 57 AGFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VFKGWI+ N T+P K GT LTV V++L D LQGH+EW+ +
Sbjct: 151 GGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNPDGLQGHKEWLAEI 197
>AT3G28690.2 | chr3:10755481-10757494 FORWARD LENGTH=454
Length = 453
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 57 AGFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VFKGWI+ N T+P K GT LTV V++L D LQGH+EW+ +
Sbjct: 112 GGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNPDGLQGHKEWLAEI 158
>AT3G01300.1 | chr3:90817-93335 REVERSE LENGTH=491
Length = 490
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPVFRL 106
GFG VFKGW++ N T+P K GT LTV V++L D LQGH+EW+ + L
Sbjct: 146 GFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNPDGLQGHKEWLAEINYL 194
>AT1G26970.1 | chr1:9359826-9361666 FORWARD LENGTH=413
Length = 412
Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFGYV+KGWID SP+K G+ + V V+ L+++ QGHR+W+ V
Sbjct: 93 GFGYVYKGWIDERTLSPSKPGSGMVVAVKKLKEEGFQGHRQWLAEV 138
>AT2G39660.1 | chr2:16531943-16533601 FORWARD LENGTH=396
Length = 395
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VFKGW+D + +P K GT L + V+ L Q+ QGHREW+ +
Sbjct: 77 GFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEI 122
>AT5G02290.1 | chr5:470387-472397 REVERSE LENGTH=390
Length = 389
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VFKGWID + +P+K GT + + V+ L Q+ QGHREW+ +
Sbjct: 78 GFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEI 123
>AT2G28930.1 | chr2:12424957-12426565 FORWARD LENGTH=424
Length = 423
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VFKGWID + +K GT + + V+ L QD QGH+EW+ V
Sbjct: 90 GFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEV 135
>AT2G02800.1 | chr2:796889-799250 REVERSE LENGTH=427
Length = 426
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 57 AGFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPVFRL 106
GFGYVFKGWID + +K G+ + V V+ L+ + QGH+EW+ V L
Sbjct: 92 GGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYL 141
>AT1G07570.3 | chr1:2331369-2333589 REVERSE LENGTH=425
Length = 424
Score = 55.1 bits (131), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VFKGWID + ++ GT L + V+ L QD QGH+EW+ V
Sbjct: 92 GFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEV 137
>AT1G69790.1 | chr1:26266838-26268818 FORWARD LENGTH=388
Length = 387
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 57 AGFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPVFRL 106
GFG V+KGWI SP+K G+ + V V+ L+ + QGH+EW+ V L
Sbjct: 93 GGFGCVYKGWIGERSLSPSKPGSGMVVAVKKLKSEGFQGHKEWLTEVHYL 142
>AT3G55450.2 | chr3:20558129-20559963 FORWARD LENGTH=427
Length = 426
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VF+GW+D +P K + L + V+ L D QGHREW+ +
Sbjct: 108 GFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEI 153
>AT1G14370.1 | chr1:4915859-4917959 FORWARD LENGTH=427
Length = 426
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 57 AGFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPVFRL 106
GFG VFKGWID + ++ G+ + V V+ L+ + QGH+EW+ V L
Sbjct: 95 GGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYL 144
>AT4G35600.2 | chr4:16896448-16898714 FORWARD LENGTH=421
Length = 420
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 58 GFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREW 99
GFG V++GW+D +P+++G+ + V ++ L +++QG EW
Sbjct: 97 GFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEW 138
>AT1G76360.1 | chr1:28643242-28646483 REVERSE LENGTH=485
Length = 484
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 57 AGFGYVFKGWIDPNITSPAKLGTDLTVVVRSLEQDALQGHREWVVPV 103
GFG VFKGW+D +P++ G + V V+ D+ QG EW V
Sbjct: 172 GGFGQVFKGWVDEKTLAPSRAGVGIPVAVKKSNPDSEQGLHEWQCEV 218
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,842,762
Number of extensions: 114604
Number of successful extensions: 843
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 14
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)