BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0367100 Os01g0367100|AK119785
         (340 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39080.1  | chr2:16309981-16312475 REVERSE LENGTH=352          409   e-114

>AT2G39080.1 | chr2:16309981-16312475 REVERSE LENGTH=352
          Length = 351

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/283 (67%), Positives = 227/283 (80%), Gaps = 1/283 (0%)

Query: 58  VLGVSDDTGVKMAGSDIVGKNDLLIVGPGVLGRLVAEKWQEEHPGCKVFGQTASTDHHNE 117
            +G + D G+K+     +G NDLLIVGPGVLGRLVAE+W++EHP  ++FGQT +T+HH E
Sbjct: 70  TIGETSD-GLKVQSHVSIGANDLLIVGPGVLGRLVAEQWRQEHPESQIFGQTVTTNHHGE 128

Query: 118 LSNIGIIPSLKGSTFPQKVPYVIFCAPPSRSDDYPGDVRVAASNWTGEGSFVFTSSTALY 177
           L N+GI PSLKG+ +  K  YVIFCAPPS+S DY G+VR AASNW GEGSF+FTSS+A Y
Sbjct: 129 LENLGIKPSLKGTEYGGKFSYVIFCAPPSQSADYAGEVRNAASNWNGEGSFLFTSSSAPY 188

Query: 178 DCSDNELCNEDCPSVPIGRSPRTDVLLKAENVVLEAGGCVLRLAGLYKIDRGAHFFWLRK 237
           DC DN  CNED P VP+G+SPRTDVLLKAE VVLE GG VLRLAGLY   RGAH +WL K
Sbjct: 189 DCFDNGECNEDSPVVPLGKSPRTDVLLKAEKVVLECGGTVLRLAGLYTETRGAHTYWLSK 248

Query: 238 GTLDTRPDHIINQIHYEDAASLAIAIMKKGHRGRIFLGCDNKPLSRQEIMDSVNRSGKFD 297
            T+D RPDHI+N IHYEDAASLA+AIMKK    RIFLGCDN PLSRQE+MD + +SGKFD
Sbjct: 249 ETIDARPDHILNLIHYEDAASLAVAIMKKKAGARIFLGCDNHPLSRQEVMDLMAQSGKFD 308

Query: 298 TKFQGFTGTDGPLGKKMENSRTRSEIGWEPKYPSFTEFLGLDS 340
            KF+GFT T GPLGKK+ NS+TR+EIGWEPKYPSF +F G+ +
Sbjct: 309 KKFKGFTSTSGPLGKKLNNSKTRAEIGWEPKYPSFAQFFGVST 351



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,989,013
Number of extensions: 300541
Number of successful extensions: 553
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)