BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0363900 Os01g0363900|AK120610
         (1198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05040.1  | chr3:1401479-1408095 REVERSE LENGTH=1203          1167   0.0  

>AT3G05040.1 | chr3:1401479-1408095 REVERSE LENGTH=1203
          Length = 1202

 Score = 1167 bits (3018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1156 (51%), Positives = 787/1156 (68%), Gaps = 15/1156 (1%)

Query: 18   MDWRSSPDARSAAFAYLESVKTGDVRALANTSFLLVRKDQSSEVRLHGFKMLQHLVRLRW 77
            +D+ S+ D R +A  +L+SVK+GDVR LA TSF LV+K+ SSE+RLH FKMLQHLVRLRW
Sbjct: 19   VDFSSTSDTRKSAVQFLDSVKSGDVRVLAKTSFHLVKKEWSSEIRLHAFKMLQHLVRLRW 78

Query: 78   EELSVAERNEFANLTVNLIPEVVGPHEEWALKSQTAALVAEVVRREGVALWNTLLPSIVS 137
            +ELS  E     NL++ L+ EV    E W LKSQ+AALVAE+VRREG   W  +   + S
Sbjct: 79   DELSPPECRGLVNLSIELMSEVANASENWPLKSQSAALVAEIVRREGPDRWQEIFTLLTS 138

Query: 138  LSNNGPIEAELVAMILRWLPEDITVHNEDLEGDRRRALLRGLTEXXXXXXXXXXXXXEKH 197
            LS  GP++AELV M LRWLPEDIT++N+DLEGDRRR LLRGLT+             E+H
Sbjct: 139  LSAQGPLQAELVLMTLRWLPEDITIYNDDLEGDRRRLLLRGLTQSLPEILPLLYNLLERH 198

Query: 198  FVAALSAHTNQQMELAKQHVGTITAVLNAANAYAEWAPVTDLAKYGLIHGCGSLFSYSDF 257
            F AA+S    Q  +LAKQH   + A LNA  AY EWAPV DLA+YG++ GC  L S SDF
Sbjct: 199  FGAAMSEAGMQHFDLAKQHADVVIACLNAIVAYTEWAPVPDLARYGILSGCSFLLSSSDF 258

Query: 258  RLHACEFFKIICQRKRPLDVAIVEYDAAMSNIFQLLMNIAQDFLVRSKMQPNVIDVNEYE 317
            RLHACE FK++C RKRP D +  E+D+A+SN+FQ+L N +++FL RS    +VID N+Y+
Sbjct: 259  RLHACEVFKLVCSRKRPSDASTAEFDSAISNLFQILTNASREFLCRSSSSSSVIDDNDYD 318

Query: 318  FAMCICETMVALGSSNMQCILADVARTLHFLQQMLEYYQHYKITLHFQSLLFWLVVLREP 377
            FA+C+CE+M +LGS+N+Q I +D      +LQQML ++QH+K+ LHF++LLFWL ++R+ 
Sbjct: 319  FAVCMCESMASLGSTNLQSISSDGGVMAVYLQQMLGFFQHFKLGLHFEALLFWLSLMRD- 377

Query: 378  SKAKSVARVSSDXXXXXXXXXXXXXXXEREKKGVSVLITDEMYSTILDVTFKRMLKKSTX 437
               K  A                    + EKK    LI D++ S ILDV+F+RMLKK   
Sbjct: 378  LLPKPKAATYPSGGGSSTGGDDSSSQVDSEKKKTLSLINDDISSAILDVSFQRMLKKEKV 437

Query: 438  XXXXXXXXX-----XXXXXGKSDFCNYRAKLLDLIKVIASQRPGITATSIVQRINIVFGD 492
                               GK DF  YR+KLL+LIK+ AS +P I++T I +R+  +   
Sbjct: 438  PTGIALSLGPLELWSDEFEGKGDFGPYRSKLLELIKLTASHKPLISSTKISERVITLIKH 497

Query: 493  ANEATKSSQDLDAMEGAQLGLEAVVSAIFDGSSDYSKIDQDTKFQIHRIFEGXXXXXXXX 552
               +    Q +  M+  QL L+ +V+ +FDGS++++    +  + +  IFEG        
Sbjct: 498  LLASPAPLQHVAVMDSQQLALDCIVATLFDGSNEFAGGSSEVHYALRGIFEGLLQQLLSL 557

Query: 553  KWSQPNLAVIHGHYLDSLGPFLRHYPDAVACIVNKLFEILTSLPITIQDPSNNF-RQARL 611
            KW++P L  +H HYLD++GPFL+++PDAV  ++NKLFE+LTSLP  ++DP+ +  R ARL
Sbjct: 558  KWNEPELMKVHVHYLDAMGPFLKYFPDAVGSLINKLFELLTSLPHVVKDPATSTSRAARL 617

Query: 612  QICSSFIRISRAADKALLPHMKNIADTMAYLQGEGRLLRAEHNHLCEAFLVMASSAGIQQ 671
            QIC+SFIRI++AA+K++LPHMK IADTM YL  EG LLR EHN L EAFLVMASSAG QQ
Sbjct: 618  QICTSFIRIAKAAEKSVLPHMKGIADTMGYLAKEGTLLRGEHNILGEAFLVMASSAGAQQ 677

Query: 672  QQEVLAWLLEPINKMWTQVEWQNAYLSDPSGLTHMFADSQFMWSIYHNITLFEKALKRGG 731
            QQEVLAWLLEP+++ W Q EWQN YLSDP GL  + +++ FMWSIYH +T FEKALKR G
Sbjct: 678  QQEVLAWLLEPLSQQWIQPEWQNNYLSDPMGLVRLCSNTSFMWSIYHTVTFFEKALKRSG 737

Query: 732  SKKSASAPQALATTVVTANLHPMCSHLPWIXXXXXXXXXCIHMLWAEPFSQSLAGEVKAA 791
             +KS        T+  T   HPM  HL W+          +H LW+    Q+L  E++AA
Sbjct: 738  YRKS----NLNTTSATTPASHPMAHHLSWMLPPLLKLLRVLHSLWSPSVFQTLPPEMRAA 793

Query: 792  KSMTVAEQTSLLGETN-KLTKGQVASADGLLDVQREG--ESKENTIRNWLRGIRDSGYNV 848
             +MT AE+ SLLGE N KL+KG    ADG  +  +EG  E+ E+ IRNWL+GIRD GYNV
Sbjct: 794  MTMTDAERYSLLGEANPKLSKGVSVYADGSFEGTKEGQAEASESDIRNWLKGIRDCGYNV 853

Query: 849  IGLSASLGDPFFRCIEGSSITAALMENVQAMEFRHLRQLIHLVIIPLVKYCPPELWRMWI 908
            +GLS ++G+ FF+C++ + +  ALMEN+Q+MEFRH+R  IH  I  +VK CP ++W  W+
Sbjct: 854  LGLSTTIGETFFKCLDANYVAMALMENLQSMEFRHIRLFIHTFITYIVKSCPADMWESWL 913

Query: 909  SNLLQPLFVHCQQALDFSWSSLLREGRAKVPDNFGNLSGSDLKVEVMEEKLLRDLTREVC 968
              LL PLF+HCQQAL  +W  LL+EGRAKVPD FG  SGSD+K+EVMEEKLLRDLTRE+ 
Sbjct: 914  GVLLHPLFIHCQQALSSAWPGLLQEGRAKVPDLFGIQSGSDMKLEVMEEKLLRDLTREIA 973

Query: 969  SVLWVLASPGLNSGLPSLEQLGPANRIN-SSLKDLELFVSSSITGFLMLNVSTAVPALRI 1027
            ++   +ASPGLN+G+P LE  G   R++ S+L DL  F S+S+ GFL+ + S A+PAL+I
Sbjct: 974  TLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGFLLNHKSVALPALQI 1033

Query: 1028 TVEVFSWTDSEAVTKIIPFCGALIHLAVATNRAELSQFVAKDLFSSILHGLSVELNSITS 1087
             +E F+WTD EA TK+  FCG ++ LA  TN  EL +FV+KD+FS+++ GL +E N+I S
Sbjct: 1034 CLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSAVIRGLGMESNAINS 1093

Query: 1088 SELVGLCREIYIYLSDRDPAPRQVLLSLPHMKQEDLLAFDESLSKTASPKDQKXXXXXXX 1147
             +LV +CREI+IYLSDRDPAPRQVLLSLP +   DL AF+E+ +KT+SPK+QK       
Sbjct: 1094 PDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEATAKTSSPKEQKQLMRSLL 1153

Query: 1148 XXASGNKLRALVGQKA 1163
               +GN L+AL  QK+
Sbjct: 1154 LLGTGNNLKALAAQKS 1169



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 22,096,161
Number of extensions: 830882
Number of successful extensions: 1971
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1964
Number of HSP's successfully gapped: 1
Length of query: 1198
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1088
Effective length of database: 8,090,809
Effective search space: 8802800192
Effective search space used: 8802800192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 117 (49.7 bits)