BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0357200 Os01g0357200|AK099419
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42890.1  | chr5:17194458-17195910 REVERSE LENGTH=124          103   2e-23

>AT5G42890.1 | chr5:17194458-17195910 REVERSE LENGTH=124
          Length = 123

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/88 (59%), Positives = 68/88 (77%), Gaps = 2/88 (2%)

Query: 1  MEGSNLKSAALLEQLHVHLASGAGKELVEMIGFVYQLNISPKKLGFDEEVFIVVDLKKGV 60
          M  + LKS A+++ +  HL++ AGKE+ E IG VYQ+NI+PKKLGF EEV  +VDLKKG 
Sbjct: 1  MANTQLKSDAIMDMMKEHLSTDAGKEVTEKIGLVYQINIAPKKLGF-EEVTYIVDLKKGE 59

Query: 61 VSKGPYEG-KPDATFSFTDDDFLAISSG 87
          V+KG YEG K DATFSF DDDF+ +++G
Sbjct: 60 VTKGKYEGGKVDATFSFKDDDFVKVATG 87



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.136    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,017,191
Number of extensions: 78628
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)