BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0356000 Os01g0356000|005-005-H02
(120 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62700.1 | chr3:23190428-23195727 REVERSE LENGTH=1540 153 1e-38
AT2G47800.1 | chr2:19574944-19580383 FORWARD LENGTH=1517 149 4e-37
AT3G60160.1 | chr3:22223829-22229195 REVERSE LENGTH=1507 91 1e-19
AT3G60970.1 | chr3:22557535-22561575 FORWARD LENGTH=1054 90 2e-19
AT3G13090.1 | chr3:4203013-4208171 REVERSE LENGTH=1467 88 1e-18
AT3G59140.1 | chr3:21863519-21868701 REVERSE LENGTH=1454 87 2e-18
AT1G04120.1 | chr1:1064848-1070396 REVERSE LENGTH=1515 86 3e-18
AT3G13080.1 | chr3:4196019-4201250 REVERSE LENGTH=1515 86 5e-18
AT3G13100.1 | chr3:4208859-4214173 REVERSE LENGTH=1494 83 3e-17
AT3G21250.2 | chr3:7457668-7463261 REVERSE LENGTH=1465 82 5e-17
AT1G30400.1 | chr1:10728139-10737697 FORWARD LENGTH=1623 74 1e-14
AT2G34660.1 | chr2:14603267-14612387 FORWARD LENGTH=1624 70 2e-13
AT1G30410.1 | chr1:10739357-10747017 FORWARD LENGTH=1469 70 4e-13
AT1G30420.1 | chr1:10748816-10756316 FORWARD LENGTH=1496 63 3e-11
AT2G07680.1 | chr2:3514774-3522491 FORWARD LENGTH=1405 53 4e-08
>AT3G62700.1 | chr3:23190428-23195727 REVERSE LENGTH=1540
Length = 1539
Score = 153 bits (387), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 84/99 (84%)
Query: 4 QKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMD 63
+ YY+++SRELTRL+SITKAPVIHHFSE++ GVM IR F+KQ F EN+ R+NA+L+MD
Sbjct: 1133 RGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRMD 1192
Query: 64 FHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLP 102
FHNN +NEWLG RLELIGS VLC++AL MV LPSNI+ P
Sbjct: 1193 FHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKP 1231
>AT2G47800.1 | chr2:19574944-19580383 FORWARD LENGTH=1517
Length = 1516
Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 84/99 (84%)
Query: 4 QKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMD 63
+ YY+++SRELTR++SITKAP+IHHFSE++ GVM IR F+KQ+ F EN+ R+N +L+MD
Sbjct: 1110 RNYYLASSRELTRMDSITKAPIIHHFSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMD 1169
Query: 64 FHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLP 102
FHNN +NEWLG RLEL+GS VLC++AL MV LPSN++ P
Sbjct: 1170 FHNNGSNEWLGFRLELVGSWVLCISALFMVLLPSNVIRP 1208
>AT3G60160.1 | chr3:22223829-22229195 REVERSE LENGTH=1507
Length = 1506
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%)
Query: 4 QKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMD 63
Q+YY T+REL+R+ + +AP++HHF+E++ G IR F ++D F NL +++ +
Sbjct: 1091 QRYYTPTARELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPW 1150
Query: 64 FHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPGTA 105
FH +A EWL RL L+ V + +L+VTLP ++ P A
Sbjct: 1151 FHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIA 1192
>AT3G60970.1 | chr3:22557535-22561575 FORWARD LENGTH=1054
Length = 1053
Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 62/102 (60%)
Query: 4 QKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMD 63
Q+YY T REL+R+ + +AP++HHF+E++ G IR F ++D F NL +++ +
Sbjct: 638 QRYYTPTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPW 697
Query: 64 FHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPGTA 105
FH +A EWL RL L+ V + +L+VTLP ++ P A
Sbjct: 698 FHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIA 739
>AT3G13090.1 | chr3:4203013-4208171 REVERSE LENGTH=1467
Length = 1466
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 63/102 (61%)
Query: 4 QKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMD 63
++YYIS +REL RL I+++PV+HHFSET+ G+ IR F ++ F + + + ++
Sbjct: 1055 RQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYSRLK 1114
Query: 64 FHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPGTA 105
FH+ A EWL RLEL+ + + +++V+ P ++ P A
Sbjct: 1115 FHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINPSLA 1156
>AT3G59140.1 | chr3:21863519-21868701 REVERSE LENGTH=1454
Length = 1453
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 65/103 (63%)
Query: 1 FDLQKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASL 60
F LQKYY T++EL R+ T++ V +H +E+V G + IR F +++ FF ++L+ ++ +
Sbjct: 1040 FRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNA 1099
Query: 61 KMDFHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPG 103
FH+ AANEWL RLE + ++VL TA M+ LP+ G
Sbjct: 1100 SPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSG 1142
>AT1G04120.1 | chr1:1064848-1070396 REVERSE LENGTH=1515
Length = 1514
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%)
Query: 1 FDLQKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASL 60
F +QKYY+++SREL R+ SI K+P+IH F E++ G IR F ++ F NL L+ +
Sbjct: 1101 FWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFV 1160
Query: 61 KMDFHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPGTA 105
+ F + AA EWL LR+EL+ +LV +L+V+ P + P A
Sbjct: 1161 RPFFCSIAAIEWLCLRMELLSTLVFAFCMVLLVSFPHGTIDPSMA 1205
>AT3G13080.1 | chr3:4196019-4201250 REVERSE LENGTH=1515
Length = 1514
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 62/102 (60%)
Query: 4 QKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMD 63
Q+YYI+ +REL+RL + KAP+I HFSET+ G IR F ++ F +N+ + +
Sbjct: 1105 QRYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPK 1164
Query: 64 FHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPGTA 105
F+ A EWL RL+++ SL + + +V++P+ ++ P A
Sbjct: 1165 FYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDPSLA 1206
>AT3G13100.1 | chr3:4208859-4214173 REVERSE LENGTH=1494
Length = 1493
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Query: 4 QKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASL-KM 62
++YYIS +REL RL I+++P++ HFSET+ G+ IR F Q+ F ++ RLN ++
Sbjct: 1077 RQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFD-QEPRFRTDIMRLNDCYSRL 1135
Query: 63 DFHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPGTA 105
FH +A EWL RL+L+ ++ ++ +++V++P ++ P A
Sbjct: 1136 RFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINPSFA 1178
>AT3G21250.2 | chr3:7457668-7463261 REVERSE LENGTH=1465
Length = 1464
Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 65/101 (64%)
Query: 3 LQKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKM 62
+Q YY++++REL R+ TKAPV+++ +ET GV+ IR F + FF L+ ++A +
Sbjct: 1050 VQDYYLASARELIRINGTTKAPVMNYAAETSLGVVTIRAFGTAERFFKNYLNLVDADAVL 1109
Query: 63 DFHNNAANEWLGLRLELIGSLVLCVTALLMVTLPSNIVLPG 103
F +NAA EW+ LR+E + ++ L ALL++ +P + PG
Sbjct: 1110 FFLSNAAMEWVILRIETLQNVTLFTCALLLILIPKGYIAPG 1150
>AT1G30400.1 | chr1:10728139-10737697 FORWARD LENGTH=1623
Length = 1622
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%)
Query: 6 YYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMDFH 65
YY +TSRE+ R++S T++PV F E + G+ IR ++ D N ++ +++
Sbjct: 1071 YYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAYDRMAEINGRSMDNNIRFTLV 1130
Query: 66 NNAANEWLGLRLELIGSLVLCVTALLMV 93
N AAN WLG+RLE++G L++ +TA L V
Sbjct: 1131 NMAANRWLGIRLEVLGGLMVWLTASLAV 1158
>AT2G34660.1 | chr2:14603267-14612387 FORWARD LENGTH=1624
Length = 1623
Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 6 YYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMDFH 65
YY +T+RE+ R++SI+++PV F E + G+ IR ++ D N ++ +++
Sbjct: 1076 YYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRFTLV 1135
Query: 66 NNAANEWLGLRLELIGSLVLCVTALLMV 93
N AN WLG+RLE +G L++ +TA V
Sbjct: 1136 NMGANRWLGIRLETLGGLMIWLTASFAV 1163
>AT1G30410.1 | chr1:10739357-10747017 FORWARD LENGTH=1469
Length = 1468
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 6 YYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMDFH 65
YY STSRE+ RL+S+T++P+ F E + G+ IR ++ D N ++ +++
Sbjct: 1042 YYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1101
Query: 66 NNAANEWLGLRLELIGSLVLCVTALLMV 93
N ++N WL +RLE +G +++ +TA V
Sbjct: 1102 NTSSNRWLTIRLETLGGVMIWLTATFAV 1129
>AT1G30420.1 | chr1:10748816-10756316 FORWARD LENGTH=1496
Length = 1495
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 6 YYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKMDFH 65
YY STSRE+ RL+S+T++P+ F E + G+ IR ++ D N ++ +++
Sbjct: 1069 YYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1128
Query: 66 NNAANEWLGLRLELIGSLVLCVTALLMV 93
+ ++N WL +R E +G +++ +TA V
Sbjct: 1129 STSSNRWLTIRSESLGGVMIWLTATFAV 1156
>AT2G07680.1 | chr2:3514774-3522491 FORWARD LENGTH=1405
Length = 1404
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 57/91 (62%)
Query: 3 LQKYYISTSRELTRLESITKAPVIHHFSETVQGVMVIRCFQKQDNFFHENLSRLNASLKM 62
LQ +Y STSREL RL+S++++P+ F+ET+ G IR F+ +++F + L +
Sbjct: 1000 LQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHLTLYQRT 1059
Query: 63 DFHNNAANEWLGLRLELIGSLVLCVTALLMV 93
+ A+ WL LRL+L+GS+++ A++ V
Sbjct: 1060 SYSEIIASLWLSLRLQLLGSMIVLFVAVMAV 1090
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,419,366
Number of extensions: 80344
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 15
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)