BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0355600 Os01g0355600|AK100134
(1067 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59770.3 | chr3:22079281-22085674 REVERSE LENGTH=1647 895 0.0
>AT3G59770.3 | chr3:22079281-22085674 REVERSE LENGTH=1647
Length = 1646
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/1114 (46%), Positives = 674/1114 (60%), Gaps = 74/1114 (6%)
Query: 2 STMLAPVNHLAELFLLAGDIHATLYTGSKAMHSEILNIFKEETGKFSKFSAAQ-NVKITL 60
ST+L+PV+ LA+LFL GDIHATLYTGSKAMHS+ILNIF EE+G F +FSAAQ N+KITL
Sbjct: 559 STILSPVSELADLFLQQGDIHATLYTGSKAMHSQILNIFSEESGAFKQFSAAQKNMKITL 618
Query: 61 QRRFQNYINDSSRQKQFEMFLGLRLFKHLPSIPISPLKVLSRPSGCMLKPVPSITPVADG 120
QRR++N + DSSRQKQ EMFLG+RLFKHLPSIP+ PL VLSRPSG LKPVP+++ ++
Sbjct: 619 QRRYKNAMVDSSRQKQLEMFLGMRLFKHLPSIPVQPLHVLSRPSGFFLKPVPNMSESSND 678
Query: 121 GSSLLSFKKKDLTWVCQQGADYVELFIYLGEPCQVCQLLLTVSHGVDDSSYPATIDVRVG 180
GSSLLS K+KD+TW+C Q AD VELFIYL EPC VCQLLLT+SHG DD + P+T+DVR G
Sbjct: 679 GSSLLSIKRKDITWLCPQAADIVELFIYLSEPCHVCQLLLTISHGADDLTCPSTVDVRTG 738
Query: 181 SSVDTLKLVLE----------------GACIPQCSNGTNLLIPLTGRIDPEDLAVTGKSA 224
++ LKLV+E GA IP+C+NGTNLL+PL G I ED+AVTG A
Sbjct: 739 RHIEDLKLVVELVQLDYRLPVIMFSGQGASIPRCANGTNLLVPLPGPISSEDMAVTGAGA 798
Query: 225 RPNIQESTYLPLLYDXXXXXXXXXXXXRVVALSFHPSARARTPITLGEIEVLGVSLPWVD 284
R + ++++ L LLYD RVVA++F+P+ R P+TLG+IEVLG+SLPW
Sbjct: 799 RLHEKDTSSLSLLYDFEELEGQLDFLTRVVAVTFYPAGAVRIPMTLGQIEVLGISLPWKG 858
Query: 285 MLTDSRRGPDFVELLHEKLSSIPGNVGSKEFANSSNSFLPQNGIVGXXXXXXXXXXXXXX 344
M T R G EL + P GS SS S L
Sbjct: 859 MFTCERTGGRLAELARK-----PDEDGS---PFSSCSDLNPFAATTSLQAETVSTPVQQK 910
Query: 345 XXXXGNFVDFLTGDFDM--PNQSDATENTSFVNVEQTNSFDDDFDVNPFATASETPSAKV 402
N +D LTG+ P E + + + D+ V + + P V
Sbjct: 911 DPFPSNLLDLLTGEDSSSDPFPQPVVECIASGGNDMLDFLDE--AVVEYRGSDTVPDGSV 968
Query: 403 NSQVEEFDS-AHIYLKFFESFSGNIKGKGLNFEQMMKLEIKRLCLDLSAAERDRALLSIG 461
DS AH+YL +S +G K L F + MKLEI+RL L++SAAERDRALLSIG
Sbjct: 969 PQNKRPKDSGAHLYLNCLKSLAGPNMAKKLEFVEAMKLEIERLRLNISAAERDRALLSIG 1028
Query: 462 VIPATVDPNRSVDYSYLLKLSSLADYLALLGHTVHEDRVNASIGLENINGHAIDFWNICE 521
+ PAT++PN S D Y+ +L +A+ LA++G ED++ ASIGLE + + IDFWNI
Sbjct: 1029 IDPATINPNSSYDELYIGRLCKIANALAVMGQASLEDKIIASIGLEKLENNVIDFWNITR 1088
Query: 522 NDESCTGDVCEVRXXX------XXXXXXXXXXXXIFVECSQCGRTXXXXXXXXXXXFLLL 575
E C G +C+VR +F+ C QC + LL
Sbjct: 1089 IGEGCDGGMCQVRAEVNKSPVGSSTKSSRGESGSVFL-CFQCMKKACKFCCAGKGALLLS 1147
Query: 576 NNTYRDLKIYGGSQG--GGYSALADNFVCKSCCSEVIKHALYVDYVRVLRSLRKKGRTEQ 633
+ RD GGS S +D+++CK CCS ++ AL VDYVRV+ SLR+ GR +
Sbjct: 1148 KSYSRDTANGGGSLADVSATSIGSDHYICKKCCSSIVLEALIVDYVRVMVSLRRSGRVDN 1207
Query: 634 AVLKAVNQVCGLEFSRISDFTKSVQY-GQKQ--------LKQLLDGEESLAEFPYASFLQ 684
A +A+N+V G S+ T + GQ L+Q+L EESL+EFP+ASFL
Sbjct: 1208 AGREALNEVFG------SNITNHLAVRGQPSPNREDFNFLRQILGKEESLSEFPFASFLH 1261
Query: 685 TVETSDDSEPLLSLLAPFGIGEQKSYWKAPLDNTSVEFSIVLGGLSDVSGAAIIVGSCGY 744
VET+ DS P SLL P + +YWKAP SVE +IVL LSDVS ++V CGY
Sbjct: 1262 KVETATDSAPFFSLLTPLNLASSNAYWKAPPSADSVEAAIVLNTLSDVSSVILLVSPCGY 1321
Query: 745 STSDCPIVEIWAGNKINREDRTFIGKWDVHDMMLSSPHLSGPEKTSSMSEEPRHIKFHFP 804
S +D P V+IWA + IN+E RT +GKWDV + SSP LSG EK+ PRHIKF F
Sbjct: 1322 SDADAPTVQIWASSDINKEARTLMGKWDVQSFIRSSPELSGSEKS---GRAPRHIKFAFK 1378
Query: 805 NPIRCRIVSIKMTLNHIDSHST-KFREEFDLLSLSEGTFSESKPTTPQNSF--------- 854
NP+RCRI+ I + L + S S+ + +LLSL E F+ P + SF
Sbjct: 1379 NPVRCRIIWITLRLPRLGSSSSVSLDKNINLLSLDENPFA---PIPRRASFGATIENDPC 1435
Query: 855 IHAKRIVIFGNTLRKETNPDTSMGIMRMKTYLDRSQPLGRFRIPVEAERLRDNDLVLEQY 914
IHAK I++ GNT+R +T S+ M ++ +LDR+ L RF IP+E ER +NDLVLE Y
Sbjct: 1436 IHAKHILVTGNTVRDKTL--QSVESMSVRNWLDRAPRLNRFLIPLETERPMENDLVLELY 1493
Query: 915 LLPNTPGIAGFRLDFFNVVRLRVTHSPSSSELDMKEFSLIPMEDRVINPAILYLQVTIVK 974
L P +P AGFRLD F+ ++ RVTHSPSS +D+ + + + MEDR ++PAILY+QV++++
Sbjct: 1494 LQPASPLAAGFRLDAFSAIKPRVTHSPSSDVVDIWDPTSVIMEDRHVSPAILYIQVSVLQ 1553
Query: 975 ESGKLV-VEEYRLPEVKVNTPLYYDFQDLQQDVRCVLFRLLGDVTAFVDDIAEIDGSNLR 1033
E K+V + EYRLPE + T LY+DF Q R V F+LLGDV AF D+ AE + R
Sbjct: 1554 EQYKMVTIAEYRLPEARDGTKLYFDFPKQIQAQR-VSFKLLGDVAAFTDEPAEAVDLSSR 1612
Query: 1034 NLPLATGLSLSNKIKLYYYADTYEMGKIGSLSAV 1067
P A GLSL+N+IKLYYYAD YE+GK SLS+V
Sbjct: 1613 ASPFAAGLSLANRIKLYYYADPYEVGKWTSLSSV 1646
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 22,069,159
Number of extensions: 936341
Number of successful extensions: 2103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2091
Number of HSP's successfully gapped: 1
Length of query: 1067
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 958
Effective length of database: 8,118,225
Effective search space: 7777259550
Effective search space used: 7777259550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)