BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0348600 Os01g0348600|AK100444
(727 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06860.1 | chr3:2161926-2166009 FORWARD LENGTH=726 1061 0.0
AT4G29010.1 | chr4:14297312-14302016 REVERSE LENGTH=722 795 0.0
AT3G15290.1 | chr3:5145054-5146613 FORWARD LENGTH=295 129 4e-30
AT4G16800.1 | chr4:9454931-9457000 REVERSE LENGTH=302 69 8e-12
AT4G16210.1 | chr4:9176864-9177978 REVERSE LENGTH=266 62 1e-09
AT5G43280.1 | chr5:17367947-17369113 FORWARD LENGTH=279 52 9e-07
>AT3G06860.1 | chr3:2161926-2166009 FORWARD LENGTH=726
Length = 725
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/720 (70%), Positives = 583/720 (80%)
Query: 8 KGRTEMEVGADGVAVITICNPPVNSLSIDVLLSLKENYAEALRRNDVKAIVVTXXXXXXX 67
KG+T MEVG DGVAVIT+ NPPVNSLS DVL +LK NY EAL RNDVKAIV+T
Sbjct: 6 KGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFS 65
Query: 68 XXXXXXXXXXVQGGKVEQPKVGYISIDIITDTLEAATKPSVXXXXXXXXXXXXEVAMACH 127
+Q G V++PK GYISIDIITD LEAA KPSV E+AMACH
Sbjct: 66 GGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 128 ARISTPTAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMMLLSKPIKGAEAHQLGLVD 187
ARIS P AQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEM+L SKP+K E H LGL+D
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 188 SLVSADDLVNTARRWALDICELKRPWIKSLYKTDKLEPLGEAREILKFXXXXXXXXXXNL 247
++V +LV TARRWALDI ++PW+ S+ KTDKL PLGEAREIL F N+
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 248 EHPLVCIDVIEEGIVSGPRAGLWKEANAFQGLLFADTCKNLVHVFFSQRATSKVPGATDL 307
+HPL+C+D IE GIVSGPRAGL KEA ++ DT K L+HVFFSQR T+KVPG TD
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 308 GLMPRKVTKVAILGGGLMGSGIATAMILSNYPVILKEVNEKFLNAGIDRIKANLQSRVRK 367
GL+PRK+ KVAI+GGGLMGSGIATA+ILSNYPVILKEVNEKFL AGI R+KANLQSRVRK
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 368 GKMTEERYEKAMSLVTGVLDYERFKDVDLVIEAVIENVKLKQQIFSDLEKYCPSHCVLAT 427
G M++E++EK MSL+ G LDYE F+DVD+VIEAVIEN+ LKQQIF+DLEKYCP HC+LA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 428 NTSTIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKK 487
NTSTIDLN IGE+T+S+DRIVGAHFFSPAH+MPLLEIVRT HTS QV+VDLLDVGKKIKK
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 488 TPIVVGNCTGFAVNRMFFPYTQSALLFVDLGMDVYKIDRACTKFGMPMGPFRLADLVGFG 547
TP+VVGNCTGFAVNRMFFPYTQ+A+ V+ G D Y IDRA +KFGMPMGPFRL DLVGFG
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545
Query: 548 VAAATGMQYLENFPERVYKSMLIPLMMEDKRTGEASRKGFYKYEDKRKATPDPEIMKYIE 607
VA AT Q++ENF ER YKSM+IPLM EDKR GEA+RKGFY Y+DKRKA PDPE+ KYIE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605
Query: 608 KSRSMAGVTPDTELMKLSEKDIVEMVFFPVINEACRVLDEGIAVKASDLDIASIFGMGFP 667
K+RS++GV D +L LSEKDI+EM FFPV+NEACRV EGIAVKA+DLDIA I GMGFP
Sbjct: 606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665
Query: 668 PYRGGIMFWADSIGAKYIHDKLEVWAKRYSDIFKPCSYLAERAANGVPLSAPAKQVKARL 727
PYRGGIMFWADSIG+KYI+ +L+ W+K Y + FKPC++LAER + GV LSAP KQ +RL
Sbjct: 666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQASSRL 725
>AT4G29010.1 | chr4:14297312-14302016 REVERSE LENGTH=722
Length = 721
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/724 (53%), Positives = 522/724 (72%), Gaps = 6/724 (0%)
Query: 6 AAKGRTEMEVGADGVAVITICNPPVNSLSIDVLLSLKENYAEALRRNDVKAIVVTXXXXX 65
A K MEVG DGVAVITI NPPVNSL+ ++ LKE + +A +RNDVKAIV+
Sbjct: 2 AKKIGVTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGR 61
Query: 66 XXXXXXXXXXXXVQ--GGKVEQPKVGYISIDIITDTLEAATKPSVXXXXXXXXXXXXEVA 123
V G P+V S++++ + +E + KP V E+A
Sbjct: 62 FSGGFDINVFQQVHKTGDLSLMPEV---SVELVCNLMEDSRKPVVAAVEGLALGGGLELA 118
Query: 124 MACHARISTPTAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMMLLSKPIKGAEAHQL 183
MACHAR++ P AQLGLPEL LGVIPGFGGTQRLPRLVGL KA +M+LLSK I E H+L
Sbjct: 119 MACHARVAAPKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKL 178
Query: 184 GLVDSLVSADDLVNTARRWALDICELKRPWIKSLYKTDKLEPLGEAREILKFXXXXXXXX 243
GL+D+LV D+++T+R+WALDI E ++P+++SL++TDK+ L EAR ILK
Sbjct: 179 GLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKI 238
Query: 244 XXNLEHPLVCIDVIEEGIVSGPRAGLWKEANAFQGLLFADTCKNLVHVFFSQRATSKVPG 303
N+ CI+VIEEGI+ G +G+ KEA F+ L+ +DT K LVHVFF+QRATSKVP
Sbjct: 239 APNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPN 298
Query: 304 ATDLGLMPRKVTKVAILGGGLMGSGIATAMILSNYPVILKEVNEKFLNAGIDRIKANLQS 363
TD+GL PR + KVA++GGGLMGSGIATA++LSN V+LKE+N +FL GI ++AN++S
Sbjct: 299 VTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKS 358
Query: 364 RVRKGKMTEERYEKAMSLVTGVLDYERFKDVDLVIEAVIENVKLKQQIFSDLEKYCPSHC 423
V +GK+T+++ KA+SL GVLDY F DVD+VIEAVIEN++LKQ IF ++EK C HC
Sbjct: 359 LVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHC 418
Query: 424 VLATNTSTIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGK 483
+LA+NTSTIDL++IGEKT SKDRIVGAHFFSPAH+MPLLEIVR+++TS QV++DL+ VGK
Sbjct: 419 ILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGK 478
Query: 484 KIKKTPIVVGNCTGFAVNRMFFPYTQSALLFVDLGMDVYKIDRACTKFGMPMGPFRLADL 543
IKK P+VVGNC GFAVNR FFPY+Q+A + +LG+D+++ID T FG+P+GPF+L DL
Sbjct: 479 AIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDL 538
Query: 544 VGFGVAAATGMQYLENFPERVYKSMLIPLMMEDKRTGEASRKGFYKYEDKRKATPDPEIM 603
G G+ A G Y + + +R+++S + L+++ R G+ + +G+Y YE K PDP ++
Sbjct: 539 AGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVL 598
Query: 604 KYIEKSRSMAGVTPDTELMKLSEKDIVEMVFFPVINEACRVLDEGIAVKASDLDIASIFG 663
+EKSR + + P + + +++K+IVEM+ FPV+NEACRVLDEG+ ++ASDLDIAS+ G
Sbjct: 599 SIVEKSRKLTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLG 658
Query: 664 MGFPPYRGGIMFWADSIGAKYIHDKLEVWAKRYSDIFKPCSYLAERAANGVPLSAPAKQV 723
M FP YRGGI+FWAD++G KYI+++L+ ++ Y FKP YL ERA NG+ LS +K
Sbjct: 659 MSFPSYRGGIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGMLLSE-SKSS 717
Query: 724 KARL 727
+++L
Sbjct: 718 RSKL 721
>AT3G15290.1 | chr3:5145054-5146613 FORWARD LENGTH=295
Length = 294
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 8/292 (2%)
Query: 313 KVTKVAILGGGLMGSGIATAMILSNYPVILKEVNEKFLNAGIDRIKANLQSRVRKGKMTE 372
++ V ++G G MGSGIA S V L + + L+ I ++++ V KG +++
Sbjct: 3 EMKSVGVVGAGQMGSGIAQLAATSGLDVWLMDADRDALSRATAAISSSVKRFVSKGLISK 62
Query: 373 ERYEKAMSLVTGVLDYERFKDVDLVIEAVIENVKLKQQIFSDLEKYCPSHCVLATNTSTI 432
E + AM + + E D+++EA++E+ +K+++F DL+ S +LA+NTS+I
Sbjct: 63 EVGDDAMHRLRLTSNLEDLCSADIIVEAIVESEDIKKKLFKDLDGIAKSSAILASNTSSI 122
Query: 433 DLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIVRTQHTSPQVVVDLLDVGKKIKKTPIVV 492
+ + TR +++G HF +P +M L+EI+R TS + + + ++ KT +
Sbjct: 123 SITRLASATRRPSQVIGMHFMNPPPIMKLVEIIRGADTSEETFLATKVLAERFGKTTVCS 182
Query: 493 GNCTGFAVNRMFFPYTQSALLFVDLGMDVYKIDRACTKFGM--PMGPFRLADLVGFGVAA 550
+ GF VNR+ P A + G+ + + K G PMGP LADL+G V
Sbjct: 183 QDYAGFVVNRILMPMINEAFHTLYTGVATKEDIDSGMKHGTNHPMGPLELADLIGLDVCL 242
Query: 551 ATGMQYLENFPERVYKSMLIPLMMEDKRTGEASRK---GFYKY-EDKRKATP 598
+ E + Y PL+++ G RK G Y Y E +K +P
Sbjct: 243 SVMKVLHEGLGDSKYAP--CPLLVQYVDAGRLGRKRGVGVYDYREATQKLSP 292
>AT4G16800.1 | chr4:9454931-9457000 REVERSE LENGTH=302
Length = 301
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 56/109 (51%)
Query: 100 LEAATKPSVXXXXXXXXXXXXEVAMACHARISTPTAQLGLPELQLGVIPGFGGTQRLPRL 159
+EA + P++ E+A+AC RI A GLPE L +IPG GGTQRL RL
Sbjct: 134 IEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSRL 193
Query: 160 VGLTKALEMMLLSKPIKGAEAHQLGLVDSLVSADDLVNTARRWALDICE 208
VG + + E++ + I EA GLV+ V+A + A A I E
Sbjct: 194 VGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINE 242
>AT4G16210.1 | chr4:9176864-9177978 REVERSE LENGTH=266
Length = 265
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 19 GVAVITICNP-PVNSLSIDVLLSLKENYAEALRRNDVKAIVVTXXXXXXXXXXXXXXXXX 77
G+AVITI P +NSL+ +++ L + + + V+ ++ T
Sbjct: 18 GIAVITINRPKSLNSLTRAMMVDLAKAFKDMDSDESVQVVIFTGSGRSFCSGVDLTAAES 77
Query: 78 VQGGKVEQPKVGYISIDIITDTLEAATKPSVXXXXXXXXXXXXEVAMACHARISTPTAQL 137
V G V+ P+ + +E KP + E+A+AC +++ A+
Sbjct: 78 VFKGDVKDPETDPVV------QMERLRKPIIGAINGFAITAGFELALACDILVASRGAKF 131
Query: 138 GLPELQLGVIPGFGGTQRLPRLVGLTKALEMMLLSKPIKGAEAHQLGLVDSLVSADDLVN 197
+ G+ P +G +Q+L R++G KA E+ L S P+ A +LG V+ +V + +
Sbjct: 132 MDTHARFGIFPSWGLSQKLSRIIGANKAREVSLTSMPLTADVAGKLGFVNHVVEEGEALK 191
Query: 198 TARRWA 203
AR A
Sbjct: 192 KAREIA 197
>AT5G43280.1 | chr5:17367947-17369113 FORWARD LENGTH=279
Length = 278
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%)
Query: 79 QGGKVEQPKVGYISIDIITDTLEAATKPSVXXXXXXXXXXXXEVAMACHARISTPTAQLG 138
+G EQ + S+ +E KP + ++ AC R + A
Sbjct: 89 RGRSSEQLRRKIKSMQAAITAIEQCRKPVIAAIHGACIGGGVDLITACDIRYCSEDAFFS 148
Query: 139 LPELQLGVIPGFGGTQRLPRLVGLTKALEMMLLSKPIKGAEAHQLGLV 186
+ E+ L ++ G QRLP +VG A+E+ L ++ G+EA LGLV
Sbjct: 149 IKEVDLAIVADLGTLQRLPSIVGYANAMELALTARRFSGSEAKDLGLV 196
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,278,273
Number of extensions: 572772
Number of successful extensions: 1383
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 6
Length of query: 727
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 621
Effective length of database: 8,200,473
Effective search space: 5092493733
Effective search space used: 5092493733
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)