BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0347100 Os01g0347100|AK100716
(495 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56230.1 | chr1:21046111-21048959 REVERSE LENGTH=753 381 e-106
AT2G22660.2 | chr2:9627737-9630840 FORWARD LENGTH=820 83 3e-16
AT4G37900.1 | chr4:17821737-17824445 REVERSE LENGTH=788 81 1e-15
>AT1G56230.1 | chr1:21046111-21048959 REVERSE LENGTH=753
Length = 752
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/449 (44%), Positives = 278/449 (61%), Gaps = 21/449 (4%)
Query: 50 SVRRYEELWMPLVAAEGAGGEAPMLVPPPDVRLVWLCHCFHHESYAAYCASRFGRLINRP 109
++RRY+ELWMPL++ G + PM++PP DV VW CHC + SY+ YC RF +LI +P
Sbjct: 61 AIRRYDELWMPLISDLTVGLKPPMILPPLDVEWVWFCHCLNPVSYSDYCERRFSKLIGKP 120
Query: 110 SILDADNEEYAADHCRDVWAAHYPSEPFDLEDNETEGNSSNDKSA--SEIIEMVQRYTGL 167
+I D +NE+YA C +W+ YP E F+ N + +S S +I +V++ L
Sbjct: 121 AIYDEENEDYAVLQCEKIWSLRYPLESFE---NRADPDSLETVSLVNEDIKSLVKKQMFL 177
Query: 168 AARFASPFISEGVYHVAARRRYMRFLELIKKIVSTTQGNTRLVPSLDILLMWLAHQSFPV 227
+F++P++SE VY +AAR RY FL ++ K + L+P+ DILLMWL HQS+P
Sbjct: 178 WEKFSAPYMSETVYLIAARLRYKGFLLILHKFKDEV---SSLIPASDILLMWLTHQSYPT 234
Query: 228 SYYADMAAMAVKDNVAKIVVGYGEVVSEEMVERTRVLWEEAYDEPYDMAGSEIDKAEVDA 287
Y D+ M + + + VV GE V + VE T+ LW+ +++PY+ AG E+ ++
Sbjct: 235 VYKDDVDEML--EEMTRKVVQVGEKVEKTEVETTKELWDRYFNQPYEKAGGELSIIANES 292
Query: 288 A---REAFYWETAASEEDANRLYKGLQPRFIMEVYVFLKGEFDSEHT---SKEFLRLRTQ 341
FYW S+ D N YK ++PRF++E+ +FL+ +E + FLRLR
Sbjct: 293 GLSNNTMFYW--PVSDMDVNTAYKSIRPRFVLELCIFLRLNPKAEQNESIDRSFLRLRVA 350
Query: 342 RCYRSLKLNIPLFNLSCK-NWQKTWHLYCEFSTRGLIIEVR--RSTSGCFRNSKLIKNIS 398
RC+R L+L+ + +LS + +WQK WHLYCEF T G I+E RS CF++ K I
Sbjct: 351 RCHRKLQLDKKMTDLSSEASWQKAWHLYCEFGTLGFILESHCDRSRGICFKSGKPEGMIE 410
Query: 399 FSWSDMLHEKSLMLTEELDVRMKAMASITPPVQAPYLLKCVPDRVTDDGGAMISDVILRT 458
F W+D+L SL L ++ AS+TPPVQAPYLL+ VPDRVTDD GAMISD + RT
Sbjct: 411 FPWNDLLRAHSLASGRFLGKQVSVFASVTPPVQAPYLLRFVPDRVTDDSGAMISDSVQRT 470
Query: 459 KGYRPQEGRWLTRTVLDHSRKECFVIRIR 487
+RPQEGRWLTRTVLDH+ +ECFVIRIR
Sbjct: 471 NNFRPQEGRWLTRTVLDHAGRECFVIRIR 499
>AT2G22660.2 | chr2:9627737-9630840 FORWARD LENGTH=820
Length = 819
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 118/252 (46%), Gaps = 35/252 (13%)
Query: 49 RSVRRYEELWMPLVA--AEGAGGEAPMLVPPPDVRLVWLCHCFHHESYAAYCASRFGRLI 106
+++ RY W+PL+ +E + LVPP D +W CH + Y + C +GR++
Sbjct: 51 KAIYRYNACWLPLLVKYSESSSVSEGSLVPPLDCEWIWHCHRLNPVRYNSDCEQFYGRVL 110
Query: 107 NRPSILDADNEEYAADHCR----DVWAAHYPSEPFDLEDNETEGNSSNDKSAS------- 155
+ +L + +C+ D+W YP EP++L+ + + ++KS++
Sbjct: 111 DNSGVLSS-----VDGNCKLKTEDLWKRLYPDEPYELDLDNIDLEDISEKSSALEKCTKY 165
Query: 156 EIIEMVQRYTGLAARFASPFISEGVYHVAARRRYMRFLELIKKIVSTTQGNTRL-VPSLD 214
+++ V+R + + + ++ ++ A RY FL LIK ++ + R VP+ D
Sbjct: 166 DLVSAVKRQSPFYYQVSRSHVNSDIFLQEAVARYKGFLYLIK--MNRERSLKRFCVPTYD 223
Query: 215 ILLMWLAHQSFPVSYYADMAAMAVKDNVAKIVV--------GYGEVVSEEMVERTRVLWE 266
+ L+W HQ PVSY DM + + K++ G G+ + + +T WE
Sbjct: 224 VDLIWHTHQLHPVSYCDDMVKL-----IGKVLEHDDTDSDRGKGKKL-DTGFSKTTAQWE 277
Query: 267 EAYDEPYDMAGS 278
E + Y AG+
Sbjct: 278 ETFGTRYWKAGA 289
>AT4G37900.1 | chr4:17821737-17824445 REVERSE LENGTH=788
Length = 787
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 118/487 (24%), Positives = 198/487 (40%), Gaps = 72/487 (14%)
Query: 49 RSVRRYEELWMPLVA--AEGAGGEAPMLVPPPDVRLVWLCHCFHHESYAAYCASRFGRLI 106
R++ RY W+PL+A E + LVPP D VW CH + Y C +GR++
Sbjct: 51 RAIYRYNAYWLPLLAQYTESSSICQGPLVPPLDCEWVWHCHRLNPVRYKTDCEQFYGRVL 110
Query: 107 NRPSILDADNEEYAADHCRDVWAAHYPSEPFDLEDNETEGNSSNDKSASEIIEMVQRYT- 165
+ ++ + N +W YP+EP+DL+ N+ ++ + +E Y
Sbjct: 111 DNSGVVSSVNGN-CKSQTETLWKRLYPTEPYDLD----FANAISEPADVSALEKCTTYDL 165
Query: 166 GLAARFASPF--------ISEGVYHVAARRRYMRFLELIKKIVSTTQGNTRL--VPSLDI 215
LA + SPF + V+ A RY FL LIK + + +L VP+ DI
Sbjct: 166 VLAVKRQSPFFYQVSRAHVDNDVFLQEAVARYKAFLYLIK---GNRERSIKLFCVPTYDI 222
Query: 216 LLMWLAHQSFPVSYYADMAAMAVKDNVAKIVVGYGEVVSEEMVER--------TRVLWEE 267
L+W HQ +SY D+ M K V+ + + S+ + T WEE
Sbjct: 223 DLIWHTHQLHAISYCNDLTKMIGK------VLEHDDTDSDRSKGKKLDTGFSGTTAQWEE 276
Query: 268 AYDEPYDMAGS----EIDKAEVDAAREAFYWETAASEEDANRLYKGLQPRFIMEVYVFLK 323
+ Y AG+ K + ++ A EE++ + + + + ++EV + +
Sbjct: 277 TFGRRYWKAGAMNRGNTPKPVTTSPYVCSGKKSIAKEEESQNVIQYPEVK-VIEVILEIV 335
Query: 324 G--EFDSEHTSKEFLRLRTQRCYRSLKLNIPLFNLSCKNWQKTWHLY-CEFSTRGLIIEV 380
G H K F+ + L LS +K L+ CE T L ++
Sbjct: 336 GVKNLPDAHKGKVFVLFSKTQPDSLFNAERRLTVLSESCGEKQVALFQCE-PTGELSFQL 394
Query: 381 RRSTSGCFRNSKLIKNISFSWSDMLH-------EKSLMLT--------EELDVRMKAMAS 425
S SK + S S+S+ L EK L LT + + ++ S
Sbjct: 395 MSS------KSKSLGFTSLSFSEFLSPVTKLSVEKWLELTPTKRGKADDPNPISLRVAVS 448
Query: 426 ITPPVQAPYLLKCVPDRVTDDGGAMISDVILRTKGYRPQEGRWLTRTVLDHSRKECFVIR 485
TPP ++P +L V R + G + +LR + + + TR V+D + E ++
Sbjct: 449 FTPPTRSPTVLHLVQARPSLKGSCFLP--MLR----KVRLAKSFTR-VVDETETEVINLQ 501
Query: 486 IRQRDLA 492
+R + A
Sbjct: 502 MRNSNDA 508
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,655,884
Number of extensions: 433109
Number of successful extensions: 1049
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1031
Number of HSP's successfully gapped: 3
Length of query: 495
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 392
Effective length of database: 8,282,721
Effective search space: 3246826632
Effective search space used: 3246826632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)