BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0347000 Os01g0347000|AK069585
(871 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23720.1 | chr5:7998309-8002594 FORWARD LENGTH=930 826 0.0
AT3G23610.3 | chr3:8478280-8479651 FORWARD LENGTH=229 100 6e-21
AT3G55270.1 | chr3:20496775-20499408 FORWARD LENGTH=785 94 5e-19
AT3G06110.2 | chr3:1843517-1844577 FORWARD LENGTH=168 83 5e-16
AT2G04550.1 | chr2:1588538-1589838 FORWARD LENGTH=258 64 3e-10
>AT5G23720.1 | chr5:7998309-8002594 FORWARD LENGTH=930
Length = 929
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/828 (53%), Positives = 554/828 (66%), Gaps = 55/828 (6%)
Query: 75 SYQLPTTSLWDRLGRVTMMDIEXXXXXXXXXXXXXXXXXXXXXXEPYEDDTSRSFEVTVN 134
S Q SLW+RLG+ + +DI+ + E+D S+ EVTVN
Sbjct: 101 SRQSSEISLWERLGKASTVDIDSSCFSWNMLSSLHHTEHSSST-DHSEEDQSKPLEVTVN 159
Query: 135 SGGVVFIALFKTSEYDDLPSKETAAVIKIAPSRMATQSERFGYELAKWLGVRTPQGRVIH 194
SGGVVF ALF +S +D KE AAVIK A SRMATQSER GYE +KWLGV+ PQ RVIH
Sbjct: 160 SGGVVFFALFNSSSSEDASRKEEAAVIKFASSRMATQSERLGYEFSKWLGVQIPQARVIH 219
Query: 195 NFSSEWHQMKDAVENARDAAISSCDELEEMICTEMLEALELSRCLFLMNYVHGSPLLENT 254
+ + EW +K+A E A+ A S DE+ EM C+E+LEALELSRCL LM+YVHG P+LE+
Sbjct: 220 SCNPEWTLIKEATEKAQAKATSEGDEVGEMTCSELLEALELSRCLLLMSYVHGCPMLESM 279
Query: 255 MPFDSHDSAEKTAEALGRVLILDLVLRNEDRLRCRPLGWRGNYANLLVADR---NAYANL 311
F++ + AE+ A ALGR+L+LDLV+RNEDRL CR L WRGN ANLL+ DR +A +
Sbjct: 280 SSFETEEKAERAAAALGRILVLDLVIRNEDRLPCRQLRWRGNPANLLLTDRIVSSAKHHE 339
Query: 312 DSLDDVYDSAIIRYKPEIIRSPQNRKPRRAVXXXXXXXXXXXXLMLPDNPS--------- 362
S D+ +DSAI RY P+ RS Q + RRA ML S
Sbjct: 340 CSFDEAFDSAIKRYHPKDYRSIQ--RERRASSVDSRSRLSISDQMLVSQASDFSDITESP 397
Query: 363 -------------QPEISSFHIIAIDSGVPRRPPACKRAKDQESYPKLVELTLNNWDYSS 409
+ + FH++AIDSGVPRRPPA KRA DQE YP+LVEL LN+ YSS
Sbjct: 398 RSYDTGLMSPMSDRSVAADFHLVAIDSGVPRRPPAGKRASDQEIYPRLVELLLNSSQYSS 457
Query: 410 NLLFELSFGKLGIPGPEEFDVSSDLSYHSPLSESDMVAAVNSFRGGFRSALRDLQRFHIF 469
NLL E++ G LG P E+ + +S++ S + V FR GFR+ LRDLQ FHIF
Sbjct: 458 NLLHEITEGSLGYPQAEDGEETSNV-------RSVVTPVVREFRNGFRAGLRDLQEFHIF 510
Query: 470 LVTLYQKLDGLLKIFFNLMYKVL-NEYDREDAGSSDSPCSTETHMDSHDSEVPKHMRRPS 528
LVTL+QKLD LL+ FF++M K + ++DRED +SP T H +H P R PS
Sbjct: 511 LVTLHQKLDVLLRAFFSMMDKTMCADFDREDFAVPESPSHTHGHEVNH-YPSPSKDRVPS 569
Query: 529 ----------------RTLSRDNF-DLSSPSSRENFMIKNFKGSSDASRGLRLTMKLRDF 571
RT + +N D SSP SRE++ ++ KG S RL KLRDF
Sbjct: 570 DNSSDHSESDMQKSVPRTPNSENKEDGSSPKSRESWHGRSGKGGESLS-SQRLAAKLRDF 628
Query: 572 NKYAKADGELCKEIEQWNDMLRTEVVKLCQDNSFNTGFFEGIDNSIAVDAYELKVRLEHI 631
+K+AK D E KE++QWN+ LR EV+KLCQ+N FNTGFFEG DN+ DAYELKVRLEHI
Sbjct: 629 HKFAKVDAESNKELDQWNETLRNEVMKLCQENGFNTGFFEGSDNNSCTDAYELKVRLEHI 688
Query: 632 LERISLISDAASTERPSQITDYLYIGGALAARSTYTLKHLGITHVLCLCANEIGQAESQQ 691
LERISLIS AA+TE+PS I + L+IGG LAARS YTL+HLGITHVLCLCANEIGQ+++Q
Sbjct: 689 LERISLISKAANTEKPSMIQENLFIGGGLAARSIYTLQHLGITHVLCLCANEIGQSDTQY 748
Query: 692 PDRFDYQNFSINDDENADISDVFQDASDFIDYVQHLHGKVLVHCFEGKSRSATVVLAYLM 751
PD F+YQNFSI DDE+++I +FQ+A DFI + + GK+LVHCFEG+SRSATVVLAYLM
Sbjct: 749 PDLFEYQNFSITDDEDSNIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLM 808
Query: 752 LRKKFTLLEAWNMLKKVHRRAHPNDGFAKVLLDLDKKLHGKISMEWHHRRPAMKVCPICG 811
L+KK TLLEAW+ L+KVHRRA PNDGFA++L++LDKK HGK+SMEW R+P MKVCP+CG
Sbjct: 809 LQKKLTLLEAWSKLRKVHRRAQPNDGFARILINLDKKCHGKVSMEWRQRKPTMKVCPVCG 868
Query: 812 KNAGXXXXXXXXXXQKAHRKISSGSVDTAMSLEIQKAVEAIKAGRGGG 859
KNAG QK+HRK+SSGSVD+AM++EIQKA+EA+K G G
Sbjct: 869 KNAGLSSSSLKLHLQKSHRKLSSGSVDSAMNMEIQKALEALKLSTGRG 916
>AT3G23610.3 | chr3:8478280-8479651 FORWARD LENGTH=229
Length = 228
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 647 PSQITDYLYIGGALAARSTYTLKHLGITHVLCLCANEIGQAESQQPDRFDYQNFSINDDE 706
PS I LY+G AA + LK +TH+L + ++ PD F Y+ + D E
Sbjct: 51 PSLIEQGLYLGSVAAASNKNVLKSYNVTHILTVASS----LRPAHPDDFVYKVVRVVDKE 106
Query: 707 NADISDVFQDASDFIDYVQHLHGKVLVHCFEGKSRSATVVLAYLMLRKKFTLLEAWNMLK 766
+ ++ F + DFID + G VLVHCF GKSRS T+V+AYLM + TL +A +K
Sbjct: 107 DTNLEMYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLMKKHGMTLAQALQHVK 166
Query: 767 KVHRRAHPNDGFAKVLLDLDKKLH 790
A PN GF + L DL+K +
Sbjct: 167 SKRPVASPNAGFIRQLQDLEKSMQ 190
>AT3G55270.1 | chr3:20496775-20499408 FORWARD LENGTH=785
Length = 784
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 7/146 (4%)
Query: 648 SQITDYLYIGGALAARSTYTLKHLGITHVLCLCANEIG--QAESQQPDRFDYQNFSINDD 705
S++ D++Y+GG A+ LK+ GITH+L N +G E + D F Y++ + D
Sbjct: 151 SKVADHIYVGGDAVAKDKSILKNNGITHIL----NCVGFICPEYFKSD-FCYRSLWLQDS 205
Query: 706 ENADISDVFQDASDFIDYVQHLHGKVLVHCFEGKSRSATVVLAYLMLRKKFTLLEAWNML 765
+ DI+ + D D+ + V+ G++ VHC +G SRS ++V+AYLM R+ + +A+ +
Sbjct: 206 PSEDITSILYDVFDYFEDVREQSGRIFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYV 265
Query: 766 KKVHRRAHPNDGFAKVLLDLDKKLHG 791
K A PN GFA LL K++H
Sbjct: 266 KSARGIADPNMGFACQLLQCQKRVHA 291
>AT3G06110.2 | chr3:1843517-1844577 FORWARD LENGTH=168
Length = 167
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 4/144 (2%)
Query: 648 SQITDYLYIGGALAARSTYTLKHLGITHVLCLCANEIGQAESQQPDRFDYQNFSINDDEN 707
S+I L+IG A + LK ITHVL + PD F Y+ + D
Sbjct: 26 SEIQQGLFIGSVAEANNKDFLKSSNITHVLTVAV----ALAPPYPDDFVYKVIEVVDRSE 81
Query: 708 ADISDVFQDASDFIDYVQHLHGKVLVHCFEGKSRSATVVLAYLMLRKKFTLLEAWNMLKK 767
D++ F + FID G VLVHCF G SRS T+V+AYLM + +A +++
Sbjct: 82 TDLTVYFDECYSFIDQAIQSGGGVLVHCFMGMSRSVTIVVAYLMKKHGMGFSKAMELVRS 141
Query: 768 VHRRAHPNDGFAKVLLDLDKKLHG 791
+A+PN GF L +K + G
Sbjct: 142 RRHQAYPNPGFISQLQQFEKSIQG 165
>AT2G04550.1 | chr2:1588538-1589838 FORWARD LENGTH=258
Length = 257
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 647 PSQI-TDYLYIGGALAARSTYTLKHLGITHVLCLCANEIGQAESQQPDRFDYQNFSINDD 705
PS+I ++LY+G A + LK GI+ VL N + ++ + F Y D+
Sbjct: 50 PSEILPEFLYLGSYDNASRSELLKTQGISRVL----NTVPMCQNLYRNSFTYHGL---DN 102
Query: 706 ENADISDVFQDASDFIDYVQHLHGKVLVHCFEGKSRSATVVLAYLMLRKKFTLLEAWNML 765
E F DA F+D + +VLVHC GKSRS VV+AYLM RK + L E+ +
Sbjct: 103 EKVL---QFDDAIKFLDQCEKDKARVLVHCMSGKSRSPAVVVAYLMKRKGWRLAESHQWV 159
Query: 766 KKVHRRAHPNDGFAKVLLDLDKKLHGKISM 795
K+ + F + L + ++ + G M
Sbjct: 160 KQRRPSTDISPEFYQQLQEFEQGIFGSEMM 189
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,096,418
Number of extensions: 696342
Number of successful extensions: 1687
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1677
Number of HSP's successfully gapped: 6
Length of query: 871
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 764
Effective length of database: 8,173,057
Effective search space: 6244215548
Effective search space used: 6244215548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)