BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0343500 Os01g0343500|AK071988
         (115 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05625.1  | chr3:1632408-1633912 FORWARD LENGTH=258             64   2e-11

>AT3G05625.1 | chr3:1632408-1633912 FORWARD LENGTH=258
          Length = 257

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 38/60 (63%)

Query: 55  FPVAAGIWDFLSXXXXXXXXXXSLAVRGGMQLFRQGDVAGSVAEFDRAIELDQRQKKCMY 114
            P  + IWD ++            AVR GMQLFRQGDVAGSVAEFDRAI LD RQK  ++
Sbjct: 48  LPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGDVAGSVAEFDRAIILDPRQKAYLW 107



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,416,212
Number of extensions: 27178
Number of successful extensions: 45
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 11,106,569
Length adjustment: 84
Effective length of query: 31
Effective length of database: 8,803,625
Effective search space: 272912375
Effective search space used: 272912375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)