BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0338600 Os01g0338600|AK066580
         (283 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43945.1  | chr2:18197995-18199988 REVERSE LENGTH=290          337   5e-93
AT3G59870.1  | chr3:22116361-22118052 REVERSE LENGTH=289          329   1e-90

>AT2G43945.1 | chr2:18197995-18199988 REVERSE LENGTH=290
          Length = 289

 Score =  337 bits (864), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 160/190 (84%), Positives = 176/190 (92%)

Query: 94  DDDNGSNIPTQVETLVRGTATVATPEYKSIPDLDYLQELLAIQQQGPRAIGFFGTRNMGF 153
           D+D+G  IPTQ + +V G+ +VA  E K   D+DY+QELLAIQQQGPR+IGFFGTRNMGF
Sbjct: 100 DEDSGLRIPTQAQAIVEGSGSVAVSELKPAADVDYIQELLAIQQQGPRSIGFFGTRNMGF 159

Query: 154 MHQQLIEILSYAMVITKNHIFTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQPPES 213
           MHQ+LIEILSYAMVITKNHI+TSGASGTNAAVIRGALRAE+PELLTVILPQSLKKQPPES
Sbjct: 160 MHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAERPELLTVILPQSLKKQPPES 219

Query: 214 QELLSKVQNLIEKPQYDHLPLIEASRLCNMDIISKVQQVICFAFHDSKLLMETCQEAKNL 273
           QELLSKVQN++EKP  DHLPL+EASRLCNMDIIS+VQQVICFAFHDSKLLMETCQEAKNL
Sbjct: 220 QELLSKVQNVVEKPHNDHLPLLEASRLCNMDIISQVQQVICFAFHDSKLLMETCQEAKNL 279

Query: 274 RKIVTLFYLD 283
           RKIVTLFYLD
Sbjct: 280 RKIVTLFYLD 289



>AT3G59870.1 | chr3:22116361-22118052 REVERSE LENGTH=289
          Length = 288

 Score =  329 bits (843), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/222 (72%), Positives = 186/222 (83%), Gaps = 5/222 (2%)

Query: 67  LCGYMRRDGHEDGERSQGIEDSLM--FGPDDDN---GSNIPTQVETLVRGTATVATPEYK 121
           +C   +    +D +     ED++   F  D+D    G  IPTQ + +V G  ++A  E +
Sbjct: 67  MCFPEQTRDQDDVDSWVNKEDNVTCRFDSDEDTTTTGLRIPTQAQAIVEGPGSLAVSELQ 126

Query: 122 SIPDLDYLQELLAIQQQGPRAIGFFGTRNMGFMHQQLIEILSYAMVITKNHIFTSGASGT 181
            +PD+DY+QELLAIQQQGPR IGFFGTRNMGFMHQ+LI+ILSYAMVITKNHI+TSGA+GT
Sbjct: 127 RVPDVDYIQELLAIQQQGPRTIGFFGTRNMGFMHQELIQILSYAMVITKNHIYTSGAAGT 186

Query: 182 NAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVQNLIEKPQYDHLPLIEASRLC 241
           NAAVIRGALRAE+PELLTVILPQSLKKQPPESQELLSKVQN+IEKP  DHLPL+EASRLC
Sbjct: 187 NAAVIRGALRAERPELLTVILPQSLKKQPPESQELLSKVQNVIEKPHNDHLPLLEASRLC 246

Query: 242 NMDIISKVQQVICFAFHDSKLLMETCQEAKNLRKIVTLFYLD 283
           NMDIIS+VQQ+ICFAFHDSKLLMETCQEA+NLRKIVTLFYLD
Sbjct: 247 NMDIISQVQQIICFAFHDSKLLMETCQEARNLRKIVTLFYLD 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,724,709
Number of extensions: 230010
Number of successful extensions: 618
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)