BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0331900 Os01g0331900|AK121761
         (183 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09330.1  | chr1:3013003-3014903 REVERSE LENGTH=187            246   4e-66

>AT1G09330.1 | chr1:3013003-3014903 REVERSE LENGTH=187
          Length = 186

 Score =  246 bits (629), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 135/180 (75%), Gaps = 1/180 (0%)

Query: 2   DQHQVVGENYANPKTCFFHVLFKAGALAFYILSAXXXXXXXXXXXXXXXXXXXDFWVVKN 61
           +Q Q   ENYANP+TC FHVLFK  ALAFYILSA                   DFWVVKN
Sbjct: 5   NQIQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKN 64

Query: 62  VSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVLGI 121
           VSGRILVGLRWWNEI+D G SVWKFE LD ESLARMNKKDSWLFWWTLYL AAAW +LG+
Sbjct: 65  VSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWFILGV 124

Query: 122 FSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWTRTTLLSSGVRSTIQSAF 181
           FSLIR  ADYLLVVGVCLSL++ANI+GFTKC KDAKK    +   T ++S  +ST+QSAF
Sbjct: 125 FSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQT-IASRFQSTVQSAF 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,667,680
Number of extensions: 127149
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)