BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0331100 Os01g0331100|AK100992
(84 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56670.1 | chr1:21241688-21243965 FORWARD LENGTH=374 114 1e-26
AT1G09390.1 | chr1:3031264-3033415 FORWARD LENGTH=371 113 2e-26
AT1G54790.2 | chr1:20441124-20443997 REVERSE LENGTH=409 85 6e-18
AT3G62280.1 | chr3:23049484-23051116 REVERSE LENGTH=366 82 6e-17
AT3G05180.1 | chr3:1468599-1470529 REVERSE LENGTH=380 72 5e-14
AT1G28600.1 | chr1:10051228-10053073 REVERSE LENGTH=394 69 5e-13
AT2G27360.1 | chr2:11706233-11707905 FORWARD LENGTH=395 68 1e-12
AT1G28610.2 | chr1:10053877-10055665 REVERSE LENGTH=384 64 1e-11
AT1G28580.1 | chr1:10044603-10046379 REVERSE LENGTH=391 64 2e-11
AT1G31550.2 | chr1:11295635-11297284 REVERSE LENGTH=395 63 3e-11
AT3G26430.1 | chr3:9674419-9675889 FORWARD LENGTH=381 61 1e-10
AT4G01130.1 | chr4:485868-488007 FORWARD LENGTH=383 61 1e-10
AT1G28590.1 | chr1:10047509-10049300 REVERSE LENGTH=404 60 3e-10
AT3G48460.1 | chr3:17949496-17951082 FORWARD LENGTH=382 58 9e-10
AT5G45910.1 | chr5:18620420-18622264 REVERSE LENGTH=373 56 5e-09
AT1G28570.1 | chr1:10041838-10044112 REVERSE LENGTH=390 55 6e-09
AT1G28640.1 | chr1:10067563-10069109 REVERSE LENGTH=390 55 1e-08
AT1G28660.1 | chr1:10071856-10073371 REVERSE LENGTH=384 54 2e-08
AT1G28670.1 | chr1:10074669-10076250 REVERSE LENGTH=385 53 4e-08
AT1G28650.1 | chr1:10069547-10071082 REVERSE LENGTH=386 53 4e-08
AT1G67830.1 | chr1:25431705-25432972 REVERSE LENGTH=373 51 1e-07
AT3G27950.1 | chr3:10378048-10379771 FORWARD LENGTH=362 50 2e-07
AT4G26790.1 | chr4:13487859-13489149 FORWARD LENGTH=352 50 3e-07
AT2G23540.1 | chr2:10024366-10026058 FORWARD LENGTH=388 48 9e-07
AT5G14450.1 | chr5:4658488-4660034 FORWARD LENGTH=390 47 2e-06
AT5G03980.1 | chr5:1074205-1075289 REVERSE LENGTH=324 46 3e-06
AT5G41890.1 | chr5:16764292-16766680 REVERSE LENGTH=376 45 6e-06
>AT1G56670.1 | chr1:21241688-21243965 FORWARD LENGTH=374
Length = 373
Score = 114 bits (284), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/75 (60%), Positives = 59/75 (78%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKIL 67
GF+ PLMACCG+GG PYNY+ ++C G VCE+GS+F+SWDG+HYT+ ANA+VA K+L
Sbjct: 297 GFKSPLMACCGYGGTPYNYNVKITCGHKGSNVCEEGSRFISWDGIHYTETANAIVAMKVL 356
Query: 68 SADYSRPKLPFSYFC 82
S YS+P PF +FC
Sbjct: 357 SMHYSKPPTPFHFFC 371
>AT1G09390.1 | chr1:3031264-3033415 FORWARD LENGTH=371
Length = 370
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 61/75 (81%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKIL 67
GFE+PLMACCG+GGPPYNY+ N++C G + C++GS+F+SWDG+HYT+ ANA+VA K+L
Sbjct: 294 GFEKPLMACCGYGGPPYNYNVNITCGNGGSKSCDEGSRFISWDGIHYTETANAIVAMKVL 353
Query: 68 SADYSRPKLPFSYFC 82
S +S P PF +FC
Sbjct: 354 SMQHSTPPTPFHFFC 368
>AT1G54790.2 | chr1:20441124-20443997 REVERSE LENGTH=409
Length = 408
Score = 85.1 bits (209), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 10/81 (12%)
Query: 7 VGFEEPLMACCGHGGPPYNYDFNVSC--------LGAGYRVCEDGSKFVSWDGVHYTDAA 58
+GFE+PLMACCG GG P NYD ++C + + C D S++++WDG+HYT+AA
Sbjct: 319 LGFEKPLMACCGVGGAPLNYDSRITCGQTKVLDGISVTAKACNDSSEYINWDGIHYTEAA 378
Query: 59 NAVVAGKILSADYSRPKLPFS 79
N V+ +IL+ YS P PFS
Sbjct: 379 NEFVSSQILTGKYSDP--PFS 397
>AT3G62280.1 | chr3:23049484-23051116 REVERSE LENGTH=366
Length = 365
Score = 82.0 bits (201), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 47/78 (60%)
Query: 4 FFFVGFEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVA 63
F GF +PLMACCG+GG P NYD +C G +C D +K + WDGVHYT+AAN V
Sbjct: 287 FKLYGFVDPLMACCGYGGRPNNYDRKATCGQPGSTICRDVTKAIVWDGVHYTEAANRFVV 346
Query: 64 GKILSADYSRPKLPFSYF 81
+L+ YS PK F
Sbjct: 347 DAVLTNRYSYPKNSLDRF 364
>AT3G05180.1 | chr3:1468599-1470529 REVERSE LENGTH=380
Length = 379
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSCLGAGY--------RVCEDGSKFVSWDGVHYTDAAN 59
GF+ +M CCG GGPP NYD V C + C D SK+V+WDG+HYT+AAN
Sbjct: 299 GFDHSIMVCCGTGGPPLNYDDQVGCGKTARSNGTIITAKPCYDSSKYVNWDGIHYTEAAN 358
Query: 60 AVVAGKILSADYSR 73
VA IL+ YS
Sbjct: 359 RFVALHILTGKYSE 372
>AT1G28600.1 | chr1:10051228-10053073 REVERSE LENGTH=394
Length = 393
Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 9 FEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILS 68
E P ACCG GGP YN++F C G + C+D SK+V WDGVH T+AA +A IL+
Sbjct: 300 MERPFPACCGIGGP-YNFNFTRKCGSVGVKSCKDPSKYVGWDGVHMTEAAYKWIADGILN 358
Query: 69 ADYSRPKLPFSYFC 82
Y+ P PF C
Sbjct: 359 GPYANP--PFDRSC 370
>AT2G27360.1 | chr2:11706233-11707905 FORWARD LENGTH=395
Length = 394
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 9 FEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILS 68
+ PL ACCG GGP YN+ F++ C G C D SK+V+WDG+H T+AA ++ +L+
Sbjct: 304 MDRPLPACCGLGGP-YNFTFSIKCGSKGVEYCSDPSKYVNWDGIHMTEAAYKWISEGVLT 362
Query: 69 ADYSRPKLPFSYFC 82
Y+ P PF++ C
Sbjct: 363 GPYAIP--PFNWSC 374
>AT1G28610.2 | chr1:10053877-10055665 REVERSE LENGTH=384
Length = 383
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 9 FEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILS 68
+ PL ACCG GGP YN+ + C G + C D SK+V+WDGVH T+AA +A +L
Sbjct: 300 MDRPLPACCGLGGP-YNFTLSKKCGSVGVKYCSDPSKYVNWDGVHMTEAAYKWIADGLLK 358
Query: 69 ADYSRPKLPFSYFC 82
Y+ P F + C
Sbjct: 359 GPYTIPS--FHWLC 370
>AT1G28580.1 | chr1:10044603-10046379 REVERSE LENGTH=391
Length = 390
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 9 FEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILS 68
PL ACCG GGP YNY C C+D SK+V+WDGVH T+AA ++A IL+
Sbjct: 307 MNRPLSACCGAGGP-YNYTVGRKCGTDIVESCDDPSKYVAWDGVHMTEAAYRLMAEGILN 365
Query: 69 ADYSRPKLPFSYFCSA 84
Y+ P PF + C +
Sbjct: 366 GPYAIP--PFDWSCRS 379
>AT1G31550.2 | chr1:11295635-11297284 REVERSE LENGTH=395
Length = 394
Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 13 LMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSADYS 72
L ACCG GGP YN++ + SC G C D SK+V+WDG+H T+AA+ +A ++ Y+
Sbjct: 309 LSACCGVGGP-YNFNLSRSCGSVGVEACSDPSKYVAWDGLHMTEAAHKSMADGLVKGPYA 367
Query: 73 RPKLPFSYFC 82
P PF + C
Sbjct: 368 IP--PFDWSC 375
>AT3G26430.1 | chr3:9674419-9675889 FORWARD LENGTH=381
Length = 380
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 7 VGFEEPLMACCGHGGPPYNYDFNVSCLGAGYRV----------CEDGSKFVSWDGVHYTD 56
+GF PL+ACCGHGG YN++ + C GA + C D S VSWDG+H+T+
Sbjct: 295 LGFRYPLVACCGHGGK-YNFNKLIKC-GAKVMIKGKEIVLAKSCNDVSFRVSWDGIHFTE 352
Query: 57 AANAVVAGKILSADYSRPKLPFSYFCS 83
N+ + +I +S P LP C+
Sbjct: 353 TTNSWIFQQINDGAFSDPPLPVKSACT 379
>AT4G01130.1 | chr4:485868-488007 FORWARD LENGTH=383
Length = 382
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSC--------LGAGYRVCEDGSKFVSWDGVHYTDAAN 59
G + + ACCG+GG PYN++ + C + C D +VSWDG+H T+AAN
Sbjct: 298 GMKHGIKACCGYGGRPYNFNQKLFCGNTKVIGNFSTTAKACHDPHNYVSWDGIHATEAAN 357
Query: 60 AVVAGKILSADYSRPKLPFSYFCS 83
++ IL S P + CS
Sbjct: 358 HHISMAILDGSISYPPFILNNLCS 381
>AT1G28590.1 | chr1:10047509-10049300 REVERSE LENGTH=404
Length = 403
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 9 FEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILS 68
PL ACCG GG YN++F+ C G C+D S++V++DG+H T+AA +++ +L
Sbjct: 306 MNRPLPACCGVGGS-YNFNFSRRCGSVGVEYCDDPSQYVNYDGIHMTEAAYRLISEGLLK 364
Query: 69 ADYSRPKLPFSYFC 82
Y+ P PF + C
Sbjct: 365 GPYAIP--PFKWSC 376
>AT3G48460.1 | chr3:17949496-17951082 FORWARD LENGTH=382
Length = 381
Score = 58.2 bits (139), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKIL 67
G E ACCG G PYN+ +C VC+D +++++WDGVH T+A V+A L
Sbjct: 303 GITEKFKACCGIG-EPYNFQVFQTCGTDAATVCKDPNQYINWDGVHLTEAMYKVMADMFL 361
Query: 68 SADYSRPKL 76
++RP+
Sbjct: 362 DGTFTRPRF 370
>AT5G45910.1 | chr5:18620420-18622264 REVERSE LENGTH=373
Length = 372
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 13 LMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSADYS 72
L ACCG G YN NV C G CED S + +WDG+H T+AA +A ++S ++
Sbjct: 308 LKACCGGGDGRYNVQPNVRCGEKGSTTCEDPSTYANWDGIHLTEAAYRHIATGLISGRFT 367
Query: 73 RP 74
P
Sbjct: 368 MP 369
>AT1G28570.1 | chr1:10041838-10044112 REVERSE LENGTH=390
Length = 389
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 11 EPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSAD 70
PL ACC GGP +N+ C+D SK+VSWDGVH T+AA ++A IL
Sbjct: 306 RPLPACCALGGP-FNFTLGRKRGTQVPECCDDPSKYVSWDGVHMTEAAYRLMAEGILKGP 364
Query: 71 YSRPKLPFSYFC 82
Y+ P PF + C
Sbjct: 365 YAIP--PFDWSC 374
>AT1G28640.1 | chr1:10067563-10069109 REVERSE LENGTH=390
Length = 389
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 11 EPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSAD 70
PL ACCG GG YN+ C G C++ S++V+WDG H T+A + +A IL+
Sbjct: 307 RPLAACCGVGGQ-YNFTIGKECGHRGVSCCQNPSEYVNWDGYHLTEATHQKMAQVILNGT 365
Query: 71 YSRPKLPFSYFCS 83
Y+ P F + CS
Sbjct: 366 YASPA--FDWSCS 376
>AT1G28660.1 | chr1:10071856-10073371 REVERSE LENGTH=384
Length = 383
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 11 EPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSAD 70
+PL ACCG GG YN+ C G C++ S++V+WDG H T+AA +A IL+
Sbjct: 307 KPLAACCGVGGK-YNFTIGKECGYEGVSYCQNPSEYVNWDGYHLTEAAYQKMAEGILNGP 365
Query: 71 YSRPKLPFS 79
Y+ P +S
Sbjct: 366 YATPAFDWS 374
>AT1G28670.1 | chr1:10074669-10076250 REVERSE LENGTH=385
Length = 384
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 11 EPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSAD 70
+PL ACCG GG YN+ C G C++ S++V+WDG H T+AA + IL+
Sbjct: 308 KPLAACCGVGGK-YNFTIGKECGYEGVNYCQNPSEYVNWDGYHLTEAAYQKMTEGILNGP 366
Query: 71 YSRPKLPFS 79
Y+ P +S
Sbjct: 367 YATPAFDWS 375
>AT1G28650.1 | chr1:10069547-10071082 REVERSE LENGTH=386
Length = 385
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 10 EEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSA 69
PL ACCG GG YN+ C G C++ S++V+WDG H T+A +A +L+
Sbjct: 308 NRPLAACCGVGGQ-YNFTIGKECGENGVSYCQNPSEYVNWDGYHLTEATYQKMAQGLLNG 366
Query: 70 DYSRPKLPFS 79
Y+ P +S
Sbjct: 367 RYTTPAFDWS 376
>AT1G67830.1 | chr1:25431705-25432972 REVERSE LENGTH=373
Length = 372
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSC----LGAGYRV-----CEDGSKFVSWDGVHYTDAA 58
GF+ L++CCGHGG YNY+ + C + G V C++ K V WDGVH+T AA
Sbjct: 295 GFKGSLVSCCGHGGK-YNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAA 353
Query: 59 NAVVAGKI 66
N + KI
Sbjct: 354 NKFIFDKI 361
>AT3G27950.1 | chr3:10378048-10379771 FORWARD LENGTH=362
Length = 361
Score = 50.1 bits (118), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 40 CEDGSKFVSWDGVHYTDAANAVVAGKILSADYSRPKLPFSYFC 82
C++ F+SWDG+HYT+ AN +VA +IL S P LP C
Sbjct: 314 CQNRKNFISWDGIHYTETANMLVANRILDGSISDPPLPTQKAC 356
>AT4G26790.1 | chr4:13487859-13489149 FORWARD LENGTH=352
Length = 351
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKIL 67
GFE ACCG G Y+ + C C D SK+V WD H T+ NA+VA +L
Sbjct: 288 GFENVRSACCGTG----YYEMSYLCDKMNPFTCSDASKYVFWDSFHPTEKTNAIVANHVL 343
Query: 68 SADYSR 73
D SR
Sbjct: 344 KYDLSR 349
>AT2G23540.1 | chr2:10024366-10026058 FORWARD LENGTH=388
Length = 387
Score = 48.1 bits (113), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 8 GFEEPLMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKIL 67
GF+ ACCG+GG Y + C G +CE+ K+V WD H ++AAN ++A ++L
Sbjct: 314 GFKSATKACCGNGG---QYAGIIPC-GPTSSLCEERDKYVFWDPYHPSEAANVIIAKQLL 369
Query: 68 SAD 70
D
Sbjct: 370 YGD 372
>AT5G14450.1 | chr5:4658488-4660034 FORWARD LENGTH=390
Length = 389
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Query: 7 VGFEEPLMACCGHGGPPYNYDF--------NVSCLGAGYRVCEDGSKFVSWDGVHYTDAA 58
+GF PL CCG+ Y++ + N G C + VSWDGVHYT+AA
Sbjct: 307 LGFANPLKVCCGYH-EKYDHIWCGNKGKVNNTEIYGGS---CPNPVMAVSWDGVHYTEAA 362
Query: 59 NAVVAGKILSADYSRPKLPFSYFC 82
N VA + L+ + P +P + C
Sbjct: 363 NKHVADRTLNGLLTDPPVPITRAC 386
>AT5G03980.1 | chr5:1074205-1075289 REVERSE LENGTH=324
Length = 323
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 13 LMACCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAA 58
L +CCG GG YNYD G VC++ KF+SWDGVH T A
Sbjct: 258 LKSCCGTGGA-YNYDGKRPYGAVGVPVCQNPHKFISWDGVHLTQKA 302
>AT5G41890.1 | chr5:16764292-16766680 REVERSE LENGTH=376
Length = 375
Score = 45.4 bits (106), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 16 CCGHGGPPYNYDFNVSCLGAGYRVCEDGSKFVSWDGVHYTDAANAVVAGKILSAD 70
CCG PP+ F + CED SKFV WD H T+AAN +VA +L D
Sbjct: 307 CCGGYFPPFAC-FKGPNQNSSQAACEDRSKFVFWDAYHPTEAANLIVAKALLDGD 360
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.141 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,261,953
Number of extensions: 86746
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 31
Length of query: 84
Length of database: 11,106,569
Length adjustment: 55
Effective length of query: 29
Effective length of database: 9,598,689
Effective search space: 278361981
Effective search space used: 278361981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)