BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0328600 Os01g0328600|J013048C16
         (159 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02475.1  | chr1:514110-515331 REVERSE LENGTH=220              115   1e-26
AT4G01883.1  | chr4:813162-814800 FORWARD LENGTH=225              113   5e-26
AT1G02470.2  | chr1:511916-513573 REVERSE LENGTH=222               86   9e-18

>AT1G02475.1 | chr1:514110-515331 REVERSE LENGTH=220
          Length = 219

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 63/73 (86%)

Query: 79  VAMEWQECSTEIEVDVPCSVAYQCYSERETIPQWMPFISSVKILEDKPDQSRWTLKYEIL 138
           V+MEWQ+CS ++EVDVP SVAY  Y +RE+ P+WMPFISSV++L+DKPD SRW+LKY   
Sbjct: 72  VSMEWQDCSVKMEVDVPVSVAYNFYLDRESFPKWMPFISSVQVLKDKPDLSRWSLKYNAF 131

Query: 139 GRDVEFSWLARNM 151
           G+D+++SWLARN+
Sbjct: 132 GQDIKYSWLARNL 144



>AT4G01883.1 | chr4:813162-814800 FORWARD LENGTH=225
          Length = 224

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 62/71 (87%)

Query: 81  MEWQECSTEIEVDVPCSVAYQCYSERETIPQWMPFISSVKILEDKPDQSRWTLKYEILGR 140
           MEWQEC  +++V+VP SVAY  YSERE+IP+WM FISSVK+L+DKPD SRWTLKY+  G+
Sbjct: 76  MEWQECKVKMKVEVPVSVAYGLYSERESIPKWMTFISSVKVLKDKPDLSRWTLKYKAFGQ 135

Query: 141 DVEFSWLARNM 151
           ++E++WLA+N+
Sbjct: 136 NLEYAWLAKNL 146



>AT1G02470.2 | chr1:511916-513573 REVERSE LENGTH=222
          Length = 221

 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 59/82 (71%), Gaps = 2/82 (2%)

Query: 71  SRPALFSPVAMEWQECS-TEIEVDVPCSVAYQCYSERETIPQWMPFISSVKILEDKPDQS 129
           S P  F PV M+WQ+ +  ++ VD P SVAY+ Y++RE  P+WMPF+SSV+ +E  PD S
Sbjct: 66  SSPKPFRPV-MQWQDVTRVKMVVDAPASVAYKLYADREMFPKWMPFLSSVEAMEGSPDLS 124

Query: 130 RWTLKYEILGRDVEFSWLARNM 151
           R+ +K E  G+++E+ +LA+N+
Sbjct: 125 RYLVKLESFGQNIEYHFLAKNL 146



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.128    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,490,181
Number of extensions: 86650
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)