BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0328500 Os01g0328500|AK058517
         (264 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G30490.1  | chr5:11612199-11614271 FORWARD LENGTH=237          152   1e-37

>AT5G30490.1 | chr5:11612199-11614271 FORWARD LENGTH=237
          Length = 236

 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 129/238 (54%), Gaps = 10/238 (4%)

Query: 28  GSAESSQQRSTDADTKSRVEDIWKKMNSGMPAKMPKPVMNKLSTPAKEKKSTTGNNWMSV 87
           GS E S + +  +    +V DIW++MN G+P K    V   L  PAK   ++  +NW S 
Sbjct: 2   GSHEQSPENNGSSTVSKKVADIWQRMNEGVPNKRVNFVSTAL--PAK---NSANSNWKSY 56

Query: 88  LGLSPSKASTN-DQGSKNGQKQAQQETSEXXXXXXXXXXXXXXXXXXXXXXXXXXEITEV 146
           LG++  K  T      K+    +  E ++                          EITEV
Sbjct: 57  LGVNVKKKDTCVSDVQKSVLNHSCSEEAKSIAAAALAAVRNATVTAAAASSRGKIEITEV 116

Query: 147 RDFAGKDIEIKKLVDADSTXX----XXXXXXXXXXXXXLDHILEQIKKKQKLSVLDKTKK 202
           +DFAG++IE+K+LV+ADS                    +D +LEQIKKKQKLSVLDKTKK
Sbjct: 117 KDFAGQEIEVKRLVEADSKEALERGNKGSSSSSAAPSAVDAVLEQIKKKQKLSVLDKTKK 176

Query: 203 DWXXXXXXXXXXXXXLDQYKKSSNKYLDKVSFLQRADYREFERERDARLSMMSKRKSD 260
           DW             LD+YKKSS++YLDKV FL+RADYR+FE+ERDARL++ SKR+ D
Sbjct: 177 DWGEYKEEHKGVEDELDKYKKSSDQYLDKVGFLERADYRQFEKERDARLALQSKRRHD 234



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.122    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,041,174
Number of extensions: 139560
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 167
Effective length of database: 8,447,217
Effective search space: 1410685239
Effective search space used: 1410685239
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 111 (47.4 bits)