BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0311500 Os01g0311500|AK103288
(997 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23720.1 | chr5:7998309-8002594 FORWARD LENGTH=930 776 0.0
AT3G23610.3 | chr3:8478280-8479651 FORWARD LENGTH=229 98 3e-20
AT3G55270.1 | chr3:20496775-20499408 FORWARD LENGTH=785 86 1e-16
AT3G06110.2 | chr3:1843517-1844577 FORWARD LENGTH=168 83 9e-16
AT2G04550.1 | chr2:1588538-1589838 FORWARD LENGTH=258 55 1e-07
>AT5G23720.1 | chr5:7998309-8002594 FORWARD LENGTH=930
Length = 929
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/930 (47%), Positives = 584/930 (62%), Gaps = 77/930 (8%)
Query: 96 ENDEERDRNL-------------SSRVVSLLFGGDIS---AQTFEKWVSLVRKRSGAFRP 139
E DEE+D L +SRV+ +L GDI+ A F +W+ LVRKRS +
Sbjct: 15 EKDEEKDLYLVHDEHESPLPLTVTSRVLYML--GDIASGPAYRFTQWLDLVRKRSATYGS 72
Query: 140 SGFPRRNSRIEVMPSGSFSLFSAADLSEQVVTAELIGKEDIPLTSSQPTEISLWERLGNA 199
SGFP R RI+ M V +A + S Q +EISLWERLG A
Sbjct: 73 SGFPHRLHRIDDM----------------VTSAGERNTDPKSPPSRQSSEISLWERLGKA 116
Query: 200 SALDIESPDFSWNMXXXXXXXXXXXXXXXXXXXMCKPLEVTVNSGGVVFFALFNSSS--N 257
S +DI+S FSWNM KPLEVTVNSGGVVFFALFNSSS +
Sbjct: 117 STVDIDSSCFSWNMLSSLHHTEHSSSTDHSEEDQSKPLEVTVNSGGVVFFALFNSSSSED 176
Query: 258 VLPKEAAAVIKFSSSKMSTQAERLGYEFARLLGVQTPQARVVHNSSLEWQDIRKAAENAR 317
KE AAVIKF+SS+M+TQ+ERLGYEF++ LGVQ PQARV+H+ + EW I++A E A+
Sbjct: 177 ASRKEEAAVIKFASSRMATQSERLGYEFSKWLGVQIPQARVIHSCNPEWTLIKEATEKAQ 236
Query: 318 SVAVSNSDEVGEMTCXXXXXXXXXXXXXXXXXYIHGSPLLESSKAFSPREAACVTASSLG 377
+ A S DEVGEMTC Y+HG P+LES +F E A A++LG
Sbjct: 237 AKATSEGDEVGEMTCSELLEALELSRCLLLMSYVHGCPMLESMSSFETEEKAERAAAALG 296
Query: 378 RVLMLDLILRNEDRLPCRQLGWRGNPANLMISDRPSAPSVDRLDDSKCTTESSI------ 431
R+L+LDL++RNEDRLPCRQL WRGNPANL+++DR V +C+ + +
Sbjct: 297 RILVLDLVIRNEDRLPCRQLRWRGNPANLLLTDR----IVSSAKHHECSFDEAFDSAIKR 352
Query: 432 --PTITQLVQSDKRTHTANA----TINSPELVSMSPK-PDALKSVRGNADSLDGPV---- 480
P + +Q ++R + ++ +I+ LVS + D +S R L P+
Sbjct: 353 YHPKDYRSIQRERRASSVDSRSRLSISDQMLVSQASDFSDITESPRSYDTGLMSPMSDRS 412
Query: 481 -----HIVAIDTXXXXXXXXXXXXKDHERYPKVVQLMLNNSDYSSNILYEISGGKLGTPG 535
H+VAID+ D E YP++V+L+LN+S YSSN+L+EI+ G LG P
Sbjct: 413 VAADFHLVAIDSGVPRRPPAGKRASDQEIYPRLVELLLNSSQYSSNLLHEITEGSLGYPQ 472
Query: 536 PDEAIAFTDSCCSISDEDNTAAIHEFRGAFRAALRDLEGFHLFLLQLYQKLDGVLRVFLS 595
++ ++ + T + EFR FRA LRDL+ FH+FL+ L+QKLD +LR F S
Sbjct: 473 AEDGEETSNVRSVV-----TPVVREFRNGFRAGLRDLQEFHIFLVTLHQKLDVLLRAFFS 527
Query: 596 IVTKG-SEESDNNDATVPDFPSP--GANYSTPCAPSKQQ----NSELHGDSEILKSTTKX 648
++ K + D D VP+ PS G + +PSK + NS H +S++ KS +
Sbjct: 528 MMDKTMCADFDREDFAVPESPSHTHGHEVNHYPSPSKDRVPSDNSSDHSESDMQKSVPRT 587
Query: 649 XXXXXXXXXXXXXXXXXESWSNKYFKGSAEGPRSLRMTMKLRDFYKTPKVDPELVKEIEQ 708
ESW + KG E S R+ KLRDF+K KVD E KE++Q
Sbjct: 588 PNSENKEDGSSPKSR--ESWHGRSGKG-GESLSSQRLAAKLRDFHKFAKVDAESNKELDQ 644
Query: 709 WNEALKSDVIKFCEENNFHSGFFDGNENNMVADAYELKVRLEHIIERIALVSDAANTERP 768
WNE L+++V+K C+EN F++GFF+G++NN DAYELKVRLEHI+ERI+L+S AANTE+P
Sbjct: 645 WNETLRNEVMKLCQENGFNTGFFEGSDNNSCTDAYELKVRLEHILERISLISKAANTEKP 704
Query: 769 SLVINNLFIGGALAARSMYTLQHLGITHILCLCSNEIGQSDSQFPDLFEYKNFXXXXXXX 828
S++ NLFIGG LAARS+YTLQHLGITH+LCLC+NEIGQSD+Q+PDLFEY+NF
Sbjct: 705 SMIQENLFIGGGLAARSIYTLQHLGITHVLCLCANEIGQSDTQYPDLFEYQNFSITDDED 764
Query: 829 XXXXXLFEEASDYFDHVDHVGGKVLVHCFEGKSRSATIVLAYLMLRKGLTLAKAWNLLKK 888
+F+EA D+ H + GGK+LVHCFEG+SRSAT+VLAYLML+K LTL +AW+ L+K
Sbjct: 765 SNIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLMLQKKLTLLEAWSKLRK 824
Query: 889 VHRRAQPNDGFAKALLALDRKLHGKVSMDWQHKRPEMKVCPICSKNVGLSTSSLKLHLQK 948
VHRRAQPNDGFA+ L+ LD+K HGKVSM+W+ ++P MKVCP+C KN GLS+SSLKLHLQK
Sbjct: 825 VHRRAQPNDGFARILINLDKKCHGKVSMEWRQRKPTMKVCPVCGKNAGLSSSSLKLHLQK 884
Query: 949 AHKRLSAGSVDSAMTLEIQKSIQSLRISRG 978
+H++LS+GSVDSAM +EIQK++++L++S G
Sbjct: 885 SHRKLSSGSVDSAMNMEIQKALEALKLSTG 914
>AT3G23610.3 | chr3:8478280-8479651 FORWARD LENGTH=229
Length = 228
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 748 RLEHIIERIALVSDAANTER----PSLVINNLFIGGALAARSMYTLQHLGITHILCLCSN 803
++++ I+ + V A T R PSL+ L++G AA + L+ +THIL + S+
Sbjct: 27 KVKNQIQALVRVIKVARTYRDDNVPSLIEQGLYLGSVAAASNKNVLKSYNVTHILTVASS 86
Query: 804 EIGQSDSQFPDLFEYKNFXXXXXXXXXXXXLFEEASDYFDHVDHVGGKVLVHCFEGKSRS 863
PD F YK F+E D+ D GG VLVHCF GKSRS
Sbjct: 87 ----LRPAHPDDFVYKVVRVVDKEDTNLEMYFDECVDFIDEAKRQGGSVLVHCFVGKSRS 142
Query: 864 ATIVLAYLMLRKGLTLAKAWNLLKKVHRRAQPNDGFAKALLALDRKL 910
TIV+AYLM + G+TLA+A +K A PN GF + L L++ +
Sbjct: 143 VTIVVAYLMKKHGMTLAQALQHVKSKRPVASPNAGFIRQLQDLEKSM 189
>AT3G55270.1 | chr3:20496775-20499408 FORWARD LENGTH=785
Length = 784
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 769 SLVINNLFIGGALAARSMYTLQHLGITHILCLCSNEIG-QSDSQFPDLFEYKNFXXXXXX 827
S V +++++GG A+ L++ GITHIL N +G F F Y++
Sbjct: 151 SKVADHIYVGGDAVAKDKSILKNNGITHIL----NCVGFICPEYFKSDFCYRSLWLQDSP 206
Query: 828 XXXXXXLFEEASDYFDHVDHVGGKVLVHCFEGKSRSATIVLAYLMLRKGLTLAKAWNLLK 887
+ + DYF+ V G++ VHC +G SRS ++V+AYLM R+G + A+ +K
Sbjct: 207 SEDITSILYDVFDYFEDVREQSGRIFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVK 266
Query: 888 KVHRRAQPNDGFAKALLALDRKLHG 912
A PN GFA LL +++H
Sbjct: 267 SARGIADPNMGFACQLLQCQKRVHA 291
>AT3G06110.2 | chr3:1843517-1844577 FORWARD LENGTH=168
Length = 167
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 773 NNLFIGGALAARSMYTLQHLGITHILCLCSNEIGQSDSQFPDLFEYKNFXXXXXXXXXXX 832
LFIG A + L+ ITH+L + +PD F YK
Sbjct: 30 QGLFIGSVAEANNKDFLKSSNITHVLTVAV----ALAPPYPDDFVYKVIEVVDRSETDLT 85
Query: 833 XLFEEASDYFDHVDHVGGKVLVHCFEGKSRSATIVLAYLMLRKGLTLAKAWNLLKKVHRR 892
F+E + D GG VLVHCF G SRS TIV+AYLM + G+ +KA L++ +
Sbjct: 86 VYFDECYSFIDQAIQSGGGVLVHCFMGMSRSVTIVVAYLMKKHGMGFSKAMELVRSRRHQ 145
Query: 893 AQPNDGFAKALLALDRKLHG 912
A PN GF L ++ + G
Sbjct: 146 AYPNPGFISQLQQFEKSIQG 165
>AT2G04550.1 | chr2:1588538-1589838 FORWARD LENGTH=258
Length = 257
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 835 FEEASDYFDHVDHVGGKVLVHCFEGKSRSATIVLAYLMLRKGLTLAKAWNLLKKVHRRAQ 894
F++A + D + +VLVHC GKSRS +V+AYLM RKG LA++ +K+
Sbjct: 108 FDDAIKFLDQCEKDKARVLVHCMSGKSRSPAVVVAYLMKRKGWRLAESHQWVKQRRPSTD 167
Query: 895 PNDGFAKALLALDRKLHGKVSM 916
+ F + L ++ + G M
Sbjct: 168 ISPEFYQQLQEFEQGIFGSEMM 189
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,197,850
Number of extensions: 698514
Number of successful extensions: 1818
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1809
Number of HSP's successfully gapped: 5
Length of query: 997
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 889
Effective length of database: 8,145,641
Effective search space: 7241474849
Effective search space used: 7241474849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)