BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0308600 Os01g0308600|Os01g0308600
         (170 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62650.2  | chr3:23168531-23168989 FORWARD LENGTH=153           54   5e-08
AT2G47485.1  | chr2:19486004-19486429 FORWARD LENGTH=142           48   2e-06

>AT3G62650.2 | chr3:23168531-23168989 FORWARD LENGTH=153
          Length = 152

 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 7/64 (10%)

Query: 76  SPRRWLVRLRDAYVSAMLRLASSPAVGFGAGAPYCTAGQESFARPRQLKEYDEKVLVEIY 135
           SP+++LV LRD+YV  M+RLA+S  VG                   Q+KEYDEK+LVEIY
Sbjct: 60  SPKKFLVWLRDSYVKMMMRLANSRVVGSSGYGGSGFGSG-------QMKEYDEKMLVEIY 112

Query: 136 RSIL 139
           +SIL
Sbjct: 113 KSIL 116



>AT2G47485.1 | chr2:19486004-19486429 FORWARD LENGTH=142
          Length = 141

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 76  SPRRWLVRLRDAYVSAMLRLASSPAVGFGAGAPYCTAGQESFARPRQLKEYDEKVLVEIY 135
           SP++ L  LRDAYV+ MLRLA+S  VG   G      G    +     KEYDEK LVEIY
Sbjct: 58  SPKKLLTWLRDAYVNMMLRLANSRVVGSSYGYGEYGYGSGLAS-----KEYDEKKLVEIY 112

Query: 136 RSIL 139
           +SIL
Sbjct: 113 KSIL 116



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,207,462
Number of extensions: 56184
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)