BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0303600 Os01g0303600|AK099496
(220 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02610.1 | chr1:553181-555854 REVERSE LENGTH=222 144 4e-35
AT4G02075.1 | chr4:913555-916414 REVERSE LENGTH=219 131 2e-31
AT2G01275.1 | chr2:142610-143809 REVERSE LENGTH=260 126 7e-30
AT5G38070.1 | chr5:15190254-15191588 FORWARD LENGTH=260 110 7e-25
AT5G62460.1 | chr5:25075545-25077072 FORWARD LENGTH=308 101 3e-22
AT3G47550.3 | chr3:17523841-17525278 FORWARD LENGTH=289 99 2e-21
AT1G14260.1 | chr1:4873200-4874430 FORWARD LENGTH=266 98 3e-21
AT2G02960.5 | chr2:862440-863980 REVERSE LENGTH=276 98 3e-21
AT4G32670.1 | chr4:15759527-15762847 REVERSE LENGTH=861 55 3e-08
AT4G34100.1 | chr4:16330590-16334864 FORWARD LENGTH=1109 50 7e-07
AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241 49 1e-06
AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467 48 5e-06
AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427 47 7e-06
AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495 47 7e-06
AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412 47 8e-06
>AT1G02610.1 | chr1:553181-555854 REVERSE LENGTH=222
Length = 221
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 4 DEVCCSCAMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICL 63
DE + +CRICHEEE E + E+PC CSG++K+AHR C+QRWCDEKG+T+CEICL
Sbjct: 9 DETYLKSSFNRCRICHEEEAE--SYFEAPCSCSGTIKFAHRDCIQRWCDEKGNTICEICL 66
Query: 64 QNFEPGYTAPPKKAQPAHVAVTIRESLEVPRPSYEPEDTPLIG----EQDYAECAGAAGR 119
Q ++PGYT K ++ AVTIR++L + R E D+ EC R
Sbjct: 67 QEYKPGYTTTSKPSRFIETAVTIRDNLHIMRRENGRRRRNRRLVNREESDFQECNSGVDR 126
Query: 120 SATWCRSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLIS 179
A+ CR +A+ F +Y +++ T+ L+A GILLP V++R I+
Sbjct: 127 GASCCRYLALIFSVILLIKHAFDAVY--GTEEYPYTIFTVLTLKAIGILLPMLVIIRTIT 184
Query: 180 TVQKG 184
+Q+
Sbjct: 185 AIQRS 189
>AT4G02075.1 | chr4:913555-916414 REVERSE LENGTH=219
Length = 218
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
Query: 4 DEVCCSCAMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICL 63
D+ + +CRICHEEEEE + PC CSG++K+AHR C+QRWC+EKG+T CEICL
Sbjct: 9 DDTKSKVRITRCRICHEEEEESFFEV--PCACSGTVKFAHRNCIQRWCNEKGNTTCEICL 66
Query: 64 QNFEPGYTAPPKKAQPAHVAVTIRESLEVPRPSYEPEDTPLIGEQDYAECAGAAGRSATW 123
Q ++ GYTA K+++ VTIR + R I E D ++C A R A++
Sbjct: 67 QVYKDGYTAVLKQSKLIEQEVTIRVN---GRRRRRSRRLVSIAESDISQCNSVADRGASF 123
Query: 124 CRSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQK 183
CRS +TF +Y FS+ T+ L+A GILLP ++++R IST+QK
Sbjct: 124 CRS--LTFTLSVFLLMKHTFDVIYGTEEYPFSVFTVLTLKAIGILLPMFIIIRTISTIQK 181
>AT2G01275.1 | chr2:142610-143809 REVERSE LENGTH=260
Length = 259
Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 11 AMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGY 70
+M +CRICH+E+ + + ME+PC CSGS+KYAHR CVQRWC+EKG T CEIC Q F+P Y
Sbjct: 55 SMAECRICHDEDLD--SNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDY 112
Query: 71 TAPPKKAQPAHVAVTIRESLEVPRPSYE-----PEDTPLIGEQDYAECAGAAGRSATWCR 125
TAPP + HV + R + + + + P D+ I +Q Y ++ S CR
Sbjct: 113 TAPPPLLELGHVPLHFRGNWGISQREHRFITVVPADSTFI-DQPY---PLSSTTSFICCR 168
Query: 126 SVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQK 183
S+ + F G ++ + F L T+ LR GI+LP YVV + ++T ++
Sbjct: 169 SLVLIFMALLILRHTLPLVLTG-SNLHVFPLFTLLFLRILGIMLPIYVVTKAVATCRR 225
>AT5G38070.1 | chr5:15190254-15191588 FORWARD LENGTH=260
Length = 259
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 94/181 (51%), Gaps = 11/181 (6%)
Query: 8 CSCAMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFE 67
C QCRICH+E+E+ T M++PC CSG+LK+AH CVQRWC+EKG T+CEIC Q ++
Sbjct: 47 CESKFVQCRICHDEDED--TNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYK 104
Query: 68 PGYTAPPKKAQPAHVAVTIR-----ESLEVPRPSYEPEDTPLIGEQDYAECAGAAGRSAT 122
PGYTAP + +++ E L++ P + T + D+ + + S
Sbjct: 105 PGYTAPRQLFHYTGISMNFGSDWGIEGLDLRNPYFL---TWGDADDDHDLYSFHSPTSLI 161
Query: 123 WCRSVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQ 182
CR +A+ G ++ +LL + L+R GILL YV + +Q
Sbjct: 162 CCRLIALL-FVLLLFLRHSLPVLLGGVDDFSITLLMLPLVRTLGILLIAYVFFKSFIVIQ 220
Query: 183 K 183
+
Sbjct: 221 R 221
>AT5G62460.1 | chr5:25075545-25077072 FORWARD LENGTH=308
Length = 307
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 13/180 (7%)
Query: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
+CRIC +EE+ +ESPC CSGSLKYAHR CVQRWC+EKG T CEIC ++++PGYTAP
Sbjct: 77 ECRIC--QEEDSVKNLESPCSCSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYQPGYTAP 134
Query: 74 PKKAQPAHVAVTIRE--------SLEVPRPSYEPEDTPLIGEQDYAECAGAAGRSATWCR 125
P + + I E L PR + DY E A + A +CR
Sbjct: 135 PPPPADDTI-IDIGEDWGNGVHLDLNDPRILAMAAAERHFFDADYDEYADSNSSGAAFCR 193
Query: 126 SVAVTFXXXXXXXXXXXXXXXGAAHQYA--FSLLTIYLLRASGILLPFYVVMRLISTVQK 183
S A+ + + + +++LRA+G LLP Y++ IS +Q+
Sbjct: 194 SAALILMALLLLRHALNLTNNNSDDEEDDPSAFFFLFMLRAAGFLLPCYIMAWAISILQR 253
>AT3G47550.3 | chr3:17523841-17525278 FORWARD LENGTH=289
Length = 288
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
+CRIC +EE+ +E+PC C+GSLKYAHR CVQRWC+EKG CEIC Q ++ GYTAP
Sbjct: 68 ECRIC--QEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDITCEICHQPYQHGYTAP 125
Query: 74 PKKAQPAHVAVTIRESLE--VPRPSYEPEDTPLIG------EQDYAECAGAAGRSATWCR 125
P + + I + E VP +P + E DY E + A +CR
Sbjct: 126 PPPPPDETI-IHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENNSSGAAFCR 184
Query: 126 SVAVTFXXXXXXXXXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQK 183
S A+ + +++LLRA+G LLP Y++ I +Q+
Sbjct: 185 SAALILMALLLLRDALNLTTNPDDEDDPTAFFSLFLLRAAGFLLPCYIMAWAIGILQR 242
>AT1G14260.1 | chr1:4873200-4874430 FORWARD LENGTH=266
Length = 265
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 10/178 (5%)
Query: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
+CRIC +E + +ESPC C+GSLKYAHR CVQRWC+EKG+T+CEIC Q ++ GYT+P
Sbjct: 56 ECRICQDECD--IKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQPYQAGYTSP 113
Query: 74 PKKAQPAHVAVTI----RES---LEVPRPSYEPEDTPLIGEQDYAECAGAAGRSATWCRS 126
P Q + I R S L+ PR E I E +Y + + A + RS
Sbjct: 114 PPPPQSEETTIDIGGGWRISGLDLDDPRLLAIAEAERQILESEYDDYTASDTSGAAFFRS 173
Query: 127 VAVTFXXXXXXX-XXXXXXXXGAAHQYAFSLLTIYLLRASGILLPFYVVMRLISTVQK 183
A+ + S+L+++LLRA+ LLP Y++ IS + +
Sbjct: 174 AALILMTLLLLRHALTIPDYSDSEDDDPSSILSLFLLRAASFLLPCYIMASAISILHR 231
>AT2G02960.5 | chr2:862440-863980 REVERSE LENGTH=276
Length = 275
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
Query: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGYTAP 73
+CRIC +E +ESPC CSGSLKYAHR CVQRWC+EKG+ +CEIC Q ++PGYTAP
Sbjct: 42 ECRICSDESP--VENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAP 99
Query: 74 PKKAQPAHVAVTIR-----ESLEV--PRPSYEPEDTPLIGEQDYAECAGAAGRSATWCRS 126
P QP + I L+V PR E E +Y E ++ A +CRS
Sbjct: 100 PPPLQPEETTIDIGGGWTISGLDVHDPRLLAIAEAERRYLESEYVEYTASSASGAAFCRS 159
>AT4G32670.1 | chr4:15759527-15762847 REVERSE LENGTH=861
Length = 860
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 11 AMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFE--P 68
A+ CRIC EE + PC C GSLKY H C+ W + + CEIC +++ P
Sbjct: 29 AVDICRICQSPEEPD-NPLRHPCACRGSLKYIHSDCLFLWLNRRKRNHCEICKRSYSIVP 87
Query: 69 GYTAPPKKAQPAH 81
Y+ + P H
Sbjct: 88 VYSENAPERLPWH 100
>AT4G34100.1 | chr4:16330590-16334864 FORWARD LENGTH=1109
Length = 1108
Score = 50.4 bits (119), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 15 CRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQ--NFEPGY-- 70
CRIC + + PC CSGS+K+ H+ C+ +W + + CE+C +F P Y
Sbjct: 68 CRICRNPGDAD-NPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAD 126
Query: 71 TAPPK 75
AP +
Sbjct: 127 NAPSR 131
>AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241
Length = 240
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 14 QCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEIC---LQNFEPGY 70
QCR+C +++EE +E C C G L AHR C+ W KGS CEIC N P
Sbjct: 73 QCRVCLQDKEE--VLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQCEICQVVAVNVTPPE 130
Query: 71 TAP 73
T P
Sbjct: 131 TQP 133
>AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467
Length = 466
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 15 CRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQ 64
CRIC E EE A + C C G L AH+ C +W KG+ C++C Q
Sbjct: 251 CRICMVEMEEDEEAFKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQ 300
>AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427
Length = 426
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 15 CRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQ 64
CRIC + EEG T ++ C C G L+ H C +W KG+ C++C Q
Sbjct: 218 CRICLDVCEEGNT-LKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQ 266
>AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495
Length = 494
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 15 CRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQ 64
CRIC E EG ++ C C G L AH+ C +W KG+ CE+C Q
Sbjct: 257 CRICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQ 306
>AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412
Length = 411
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 15 CRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQ 64
CRIC + EEG T ++ C C G L+ H C +W KG+ +C++C Q
Sbjct: 203 CRICLDVCEEGNT-LKMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQ 251
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,309,924
Number of extensions: 163270
Number of successful extensions: 498
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 18
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)