BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0303300 Os01g0303300|J075157P20
         (95 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16160.2  | chr4:9157545-9158738 FORWARD LENGTH=179             45   6e-06

>AT4G16160.2 | chr4:9157545-9158738 FORWARD LENGTH=179
          Length = 178

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 26  GLAAGVYSGLTYGLREAR-GCHDWKNSXXXXXXXXXXXXL-TGDTGNADHMVHFAITG 81
           GLAAG+YSG+TYG+ E R G HDW+NS            + T +  + + +V  A+TG
Sbjct: 107 GLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTGAAMAMTTSERTSHEQVVQSALTG 164



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,561,816
Number of extensions: 42006
Number of successful extensions: 62
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)