BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0303200 Os01g0303200|AK073769
         (967 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G35220.1  | chr1:12909293-12913916 FORWARD LENGTH=1006        1139   0.0  

>AT1G35220.1 | chr1:12909293-12913916 FORWARD LENGTH=1006
          Length = 1005

 Score = 1139 bits (2947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/993 (57%), Positives = 706/993 (71%), Gaps = 53/993 (5%)

Query: 4   TVEEQMVVKAIREECPWESLPKRLQSTLHTKEEWHRRIVDYCIRKRLQWNTCFARRVCRE 63
           T+E+Q++ KA+REEC WE+LPKRLQS L +K+EWHRR+  +CI+KRL WNTCFA +VC+E
Sbjct: 7   TIEDQLISKAVREECQWENLPKRLQSILGSKDEWHRRVTAHCIKKRLLWNTCFACKVCKE 66

Query: 64  GEYYEEMMKYLRRNLALYPYHLADYICRVSRISPFRYYCDILFEAMKNEQPYDSIPNFTA 123
           GEYYE+MM+YLR+NLAL+PYHLA+Y+CRV RISPFRYYCD++FE M+NEQPYDSIPNF+A
Sbjct: 67  GEYYEDMMRYLRKNLALFPYHLAEYVCRVMRISPFRYYCDMIFEVMRNEQPYDSIPNFSA 126

Query: 124 ADALRLTGVGRNEFIDIMNKCRSKKLMWKLNKSIAKELLPTQPVDFPIDPWWGVCLVNFT 183
           ADA RLTG+GRNEFIDIMNKCRSKK+MWKLNKSIAK+ LPT PVDFPIDPWWGVCLVNFT
Sbjct: 127 ADAFRLTGIGRNEFIDIMNKCRSKKIMWKLNKSIAKDFLPTLPVDFPIDPWWGVCLVNFT 186

Query: 184 IEEFKKLSEEETATIDKICKEEANSYVLFDPKVIDGLYKRGLVYFDVPVYPDDRFKVSRL 243
           IEEFKKLSE+E ATIDKICKEEAN+Y LFDP+VI GLY+RGLVYFDVPVY DDRFKVS+L
Sbjct: 187 IEEFKKLSEDEMATIDKICKEEANAYFLFDPEVIKGLYQRGLVYFDVPVYQDDRFKVSKL 246

Query: 244 EGFVSNKDQSYEDPIEELLYAVFVVSSXXXXXXXXXXXXXXXXXXXXXXXSFACRLGWAV 303
           EGF+SN++QSYEDPIEELLYAVFVVS+                       SF CRLGWAV
Sbjct: 247 EGFISNREQSYEDPIEELLYAVFVVSNENSTVAELASTLQADVTQLQAAASFVCRLGWAV 306

Query: 304 KLMDADSVLEDAPTFPSNILSDDEEGSNASINS---------EKSGQQLLSVDAGPRKIS 354
           KL+D  SVL D    P  ILSDDE+ S ASI+S          + G  L +  +G R  S
Sbjct: 307 KLIDPSSVLHDKIGSPRAILSDDEDASRASISSTYRSADGEEAQHGDNLGTESSGSR--S 364

Query: 355 GTAHVALVVDANVTSYLMMGSLSPGLKSHAVTLYEAGKLGDSCIAELCSDLASLEGKKFE 414
               VA +VDAN+TSYLMMGS+SPGLKSHAVTLYEAGKLG + I +LC DL++LEG KFE
Sbjct: 365 SHVRVAFIVDANITSYLMMGSVSPGLKSHAVTLYEAGKLGHTSIPDLCQDLSTLEGAKFE 424

Query: 415 GVLEEFANHAFSLRCFLECLQSGGVSTNVNIDKAGEAKLTTS---------SLQDNVTAH 465
           G L+EFANHAFSLRC LECL SGGV+T+  +D  G   L+           +L DN    
Sbjct: 425 GELQEFANHAFSLRCVLECLISGGVATDAIVDTMGSGTLSNDEAVTLLADVNLPDNSGDS 484

Query: 466 LTKINIE-------------DTDEMPQQ-KHSGLNSSDGKMLTSSATLLESGEGM--EGN 509
           LT   IE              T+ +P+  KH   +S+     T+      S   +  EG 
Sbjct: 485 LTSQIIEASMVSDAPQEVPLSTEHVPESTKHEAASSTPSVDTTALTETFSSNLNLQNEGK 544

Query: 510 DVEGSGTTELDGSTDINVVKTKRKYRVDILRCESLASLPPATLERLFLRDYDIIVSMXXX 569
            +   G     G+      K ++KYRVDILRCESLASL PATL+RLF RDYDI+VSM   
Sbjct: 545 PIPVEGPDTGKGN------KKRKKYRVDILRCESLASLTPATLDRLFSRDYDIVVSMIPL 598

Query: 570 XXXXXXXXXXXXIHFGPPSYSSMTPWMKLVLYTAGDCGPLSAVFMKGQRIRLLPKPLAGC 629
                       +HFGPPS+SSMT WMKLVLY+    GPLS + MKGQ +R+LP PLAGC
Sbjct: 599 PLTTVLPGPSGPVHFGPPSHSSMTQWMKLVLYSTVGIGPLSVILMKGQCLRMLPAPLAGC 658

Query: 630 EKALIWSWDSSVVGGLGGKFEGNLVKGNLLLHCLNSMLKQSAVMVQPLSVNDLNASGNLV 689
           EKA+IWSWD S VGGLG KFEGNLVKG +LLHCLN +LK SAV+VQPLS +DL++SG +V
Sbjct: 659 EKAIIWSWDGSSVGGLGNKFEGNLVKGGILLHCLNCLLKCSAVLVQPLSKHDLDSSGRIV 718

Query: 690 TVDIPLPLKSDDQSIASVIAQTNLPQEQVLNLASVLKDLSSKFEXXXXXXXXXXXXXXXT 749
           T+DIPLPLK+ D SI     +  LP E+   L S+L  L++  E                
Sbjct: 719 TLDIPLPLKNSDGSIPHFGDELGLPLEENTKLNSLLTKLANNMELKTVGYIRLLKLFKAK 778

Query: 750 ESDE--SHLENGSYQWVPLSLEFGIPLFSPKLCERICERVVESCILQKEDLAEHYDVMQT 807
           +S +  S   +  Y+WVPL++EFG PLFSPKLC  IC+R+V S +LQ + L E +D MQ 
Sbjct: 779 DSLKHFSPDNDEKYEWVPLTVEFGFPLFSPKLCNNICKRIVSSQLLQADSLMEQHDAMQC 838

Query: 808 VRRRLRELCSEYQATGPVAKLFNKRGSSKDLPRV--LINTISGRWNPVNDPSAP-----S 860
           +R+RL+++C+ YQATGP AKL  ++  +K+  R   L+N  SGRWNP+ DPS+P     S
Sbjct: 839 IRKRLKDICALYQATGPAAKLLYQKEQAKEPTRTNKLMNYASGRWNPLVDPSSPISGATS 898

Query: 861 EHERLKLAGRQRCQTEVVGFDGTFIRSYALPPEHDEAGTKSLSEEQSSAHDGKPDTEDAD 920
           E +RLKLA RQRC+TEV+ FDG+ +RSY L P + EA T+S+ +E +     K D+++AD
Sbjct: 899 EFQRLKLANRQRCRTEVLSFDGSILRSYTLAPVY-EAATRSI-DENAPLSTTKSDSDEAD 956

Query: 921 SKDVLLPGVNLIFDGAELHPFDISACLQARQPL 953
           S++V+LPG+NL++DG+ELHPFDI ACLQARQP+
Sbjct: 957 SREVILPGLNLLYDGSELHPFDIGACLQARQPV 989



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,500,284
Number of extensions: 873475
Number of successful extensions: 2438
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2430
Number of HSP's successfully gapped: 1
Length of query: 967
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 859
Effective length of database: 8,145,641
Effective search space: 6997105619
Effective search space used: 6997105619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)