BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0295900 Os01g0295900|J075057N16
         (133 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45270.1  | chr2:18666583-18669332 FORWARD LENGTH=481          169   4e-43

>AT2G45270.1 | chr2:18666583-18669332 FORWARD LENGTH=481
          Length = 480

 Score =  169 bits (428), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 85/106 (80%)

Query: 25  VVSGGVASNQYVRTHLNQIAEKNGLQLVCPPPRLCTDNGVMIAWTGIEHFIAGRFDDPPA 84
           V+SGGVASN+YVR  LN I E   L+LVCPPP LCTDNGVM+AWTG+EHF  GR+D PP 
Sbjct: 366 VISGGVASNKYVRLRLNNIVENKNLKLVCPPPSLCTDNGVMVAWTGLEHFRVGRYDPPPP 425

Query: 85  VDEPDDLQYDLRPRWPLGEEYSDGRCVARSMKTARVHPSLASMIQG 130
             EP+D  YDLRPRWPLGEEY+ GR  ARSM+TAR+HPSL S+I+ 
Sbjct: 426 ATEPEDYVYDLRPRWPLGEEYAKGRSEARSMRTARIHPSLTSIIRA 471



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,044,368
Number of extensions: 125135
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 1
Length of query: 133
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 45
Effective length of database: 8,693,961
Effective search space: 391228245
Effective search space used: 391228245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)