BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0284900 Os01g0284900|AK106618
(297 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62070.1 | chr3:22983710-22984482 REVERSE LENGTH=229 79 2e-15
AT2G46940.1 | chr2:19286658-19287505 REVERSE LENGTH=253 78 6e-15
AT4G01670.1 | chr4:711464-712511 REVERSE LENGTH=250 70 1e-12
AT2G31560.1 | chr2:13436611-13437312 FORWARD LENGTH=203 54 1e-07
AT1G05870.1 | chr1:1772454-1773228 REVERSE LENGTH=190 51 7e-07
AT2G43340.1 | chr2:18007769-18008416 FORWARD LENGTH=190 50 2e-06
>AT3G62070.1 | chr3:22983710-22984482 REVERSE LENGTH=229
Length = 228
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 218 MDMEEMRACRDLGLDL--PCDWTVEIPCYALSGVDTXXXXXXXXXXXXWRISSPGDDPKD 275
M ++E++ACRDLG +L P + + S DT WRISSPGDDPK+
Sbjct: 148 MGLQEVKACRDLGFELEVPVPGRISVSTTG-SNFDTQTSSGGDSPIATWRISSPGDDPKE 206
Query: 276 VKARLKVWAQAVALASASRLGS 297
VKARLKVWAQAVALASA+R S
Sbjct: 207 VKARLKVWAQAVALASATRQAS 228
>AT2G46940.1 | chr2:19286658-19287505 REVERSE LENGTH=253
Length = 252
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 7/79 (8%)
Query: 216 VAMDMEEMRACRDLGLDLPCDWTVEIPCYALSGVDTXXXXXXXXXXXXWRISSPGDDPKD 275
+ M EE++ACRDLG +L ++P +SG + WRISSPGDDPK+
Sbjct: 181 MKMGFEEVKACRDLGFEL------DVPG-RVSGSNRETSSGGNSPIANWRISSPGDDPKE 233
Query: 276 VKARLKVWAQAVALASASR 294
VKARLK+WAQAVALASASR
Sbjct: 234 VKARLKMWAQAVALASASR 252
>AT4G01670.1 | chr4:711464-712511 REVERSE LENGTH=250
Length = 249
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 216 VAMDMEEMRACRDLGLDLPCDWTVEIPCYALSGVDTXXXXXXXXXXXXWRISSPGDDPKD 275
+ MD+EE++AC+DLG +L Y+ S VDT RISSPGDDPKD
Sbjct: 169 LCMDLEEVKACKDLGFELEPGRV----SYSGSTVDTSSGGNSPISSN-HRISSPGDDPKD 223
Query: 276 VKARLKVWAQAVALASASR 294
VKARLK WAQAVA S +
Sbjct: 224 VKARLKAWAQAVAFVSTTH 242
>AT2G31560.1 | chr2:13436611-13437312 FORWARD LENGTH=203
Length = 202
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 30/97 (30%)
Query: 219 DMEEMRACRDLGLDLPCDWTVEIP-----------CYALSGV----------------DT 251
D+EE++ C DLG D EIP CY++S D+
Sbjct: 102 DLEELKGCLDLGFGFSYD---EIPELCNTLPALELCYSMSQKFLDDKQQNHHKSQEEDDS 158
Query: 252 XXXXXXXXXXXXWRISSPGDDPKDVKARLKVWAQAVA 288
W+ISSPGDDP DVKARLK WAQ VA
Sbjct: 159 SPPPTTTAPIANWKISSPGDDPDDVKARLKYWAQTVA 195
>AT1G05870.1 | chr1:1772454-1773228 REVERSE LENGTH=190
Length = 189
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 44/98 (44%), Gaps = 31/98 (31%)
Query: 219 DMEEMRACRDLGLDLPCDWTVEIP-----------CYALSG--VDTXXXXXXXXXX---- 261
D+E++R C DLG D EIP CY++S +D
Sbjct: 88 DLEDLRGCLDLGFGFSYD---EIPELCNTLPALELCYSMSQKFLDDKQNKSPETSSVEDC 144
Query: 262 -----------XXWRISSPGDDPKDVKARLKVWAQAVA 288
W+ISSPGD+P DVKARLK WAQAVA
Sbjct: 145 PSPPLVTATPIANWKISSPGDNPDDVKARLKYWAQAVA 182
>AT2G43340.1 | chr2:18007769-18008416 FORWARD LENGTH=190
Length = 189
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 30/97 (30%)
Query: 219 DMEEMRACRDLGLDLPCDWTVEIP-----------CYALSG--VDTXXXXXXXXX----- 260
D+EE++ C DLG + EIP CY++S +D
Sbjct: 89 DLEELKGCVDLGFGFNYE---EIPELCNTLPALELCYSMSQKFIDQDHHHHSSSSPEKKS 145
Query: 261 ---------XXXWRISSPGDDPKDVKARLKVWAQAVA 288
W+ISSPGD+P DVKARLK WAQAVA
Sbjct: 146 SVLDSPVSPIASWKISSPGDNPDDVKARLKFWAQAVA 182
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,861,695
Number of extensions: 111464
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 6
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)