BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0281400 Os01g0281400|J090014O11
         (182 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G31480.1  | chr4:15264145-15267384 FORWARD LENGTH=949          323   3e-89
AT4G31490.1  | chr4:15269460-15272693 FORWARD LENGTH=949          323   3e-89

>AT4G31480.1 | chr4:15264145-15267384 FORWARD LENGTH=949
          Length = 948

 Score =  323 bits (828), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/171 (88%), Positives = 161/171 (94%)

Query: 1   GMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL 60
           GMSQLELED+VQDDLK ATG FTKD  DAN+LNRILQLTGFSDPVYAEAYVTVHHYDI L
Sbjct: 683 GMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIAL 742

Query: 61  DVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG 120
           +VT+INRTKETLQNLCLELATMGDLKLV+RPQNY+LAPE S QI+ANIKVSSTETGVIFG
Sbjct: 743 EVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFG 802

Query: 121 NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKV 171
           NIVYETSNVMER+VVVLNDIHIDIMDYISPA C++V FR MWAEFEWENKV
Sbjct: 803 NIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKV 853



>AT4G31490.1 | chr4:15269460-15272693 FORWARD LENGTH=949
          Length = 948

 Score =  323 bits (828), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 151/171 (88%), Positives = 161/171 (94%)

Query: 1   GMSQLELEDEVQDDLKAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVL 60
           GMSQLELED+VQDDLK ATG FTKD  DAN+LNRILQLTGFSDPVYAEAYVTVHHYDI L
Sbjct: 683 GMSQLELEDQVQDDLKRATGEFTKDENDANKLNRILQLTGFSDPVYAEAYVTVHHYDIAL 742

Query: 61  DVTIINRTKETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFG 120
           +VT+INRTKETLQNLCLELATMGDLKLV+RPQNY+LAPE S QI+ANIKVSSTETGVIFG
Sbjct: 743 EVTVINRTKETLQNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFG 802

Query: 121 NIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKV 171
           NIVYETSNVMER+VVVLNDIHIDIMDYISPA C++V FR MWAEFEWENKV
Sbjct: 803 NIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKV 853



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,799,037
Number of extensions: 141899
Number of successful extensions: 355
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)