BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0267400 Os01g0267400|J080051F22
(129 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40935.1 | chr2:17083199-17084216 FORWARD LENGTH=191 157 1e-39
AT1G49030.1 | chr1:18136794-18137846 FORWARD LENGTH=225 75 1e-14
AT3G18460.1 | chr3:6333048-6333948 REVERSE LENGTH=185 71 1e-13
AT3G18470.1 | chr3:6335000-6335698 REVERSE LENGTH=134 69 7e-13
AT2G45010.1 | chr2:18568045-18569615 FORWARD LENGTH=245 67 2e-12
AT1G58320.1 | chr1:21634123-21635303 REVERSE LENGTH=149 62 1e-10
AT1G68630.1 | chr1:25768653-25769458 FORWARD LENGTH=162 61 2e-10
AT3G18450.1 | chr3:6331229-6332118 REVERSE LENGTH=185 59 6e-10
AT1G14870.1 | chr1:5128591-5129458 REVERSE LENGTH=153 58 2e-09
AT5G51400.1 | chr5:20878784-20880036 REVERSE LENGTH=242 58 2e-09
AT2G37110.1 | chr2:15592689-15593726 FORWARD LENGTH=243 57 3e-09
AT5G35525.1 | chr5:13707084-13707818 FORWARD LENGTH=153 55 9e-09
AT1G52200.1 | chr1:19442271-19443407 REVERSE LENGTH=191 55 9e-09
AT1G68610.1 | chr1:25763623-25764105 FORWARD LENGTH=161 55 1e-08
AT1G14880.1 | chr1:5132791-5133663 REVERSE LENGTH=152 51 1e-07
AT4G35920.1 | chr4:17012106-17014192 REVERSE LENGTH=422 51 1e-07
>AT2G40935.1 | chr2:17083199-17084216 FORWARD LENGTH=191
Length = 190
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 91/126 (72%), Gaps = 6/126 (4%)
Query: 7 IGATCPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYA 66
+G CPC++FG+NA+ LGSGT AG C THC+ W L+ ++CC T G +L +PG V+CYA
Sbjct: 63 VGLFCPCYIFGKNAELLGSGTFAGPCLTHCISWALVNTICCFATNGALLGLPGCFVSCYA 122
Query: 67 CGYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTDSGS-----SAPTVTPP 121
CGYR++LRAKYNL EAPCGD TH FCHLCAICQEYREIRE++ SGS P
Sbjct: 123 CGYRKSLRAKYNLQEAPCGDFVTHFFCHLCAICQEYREIREQS-SGSYPLDMKMAITNAP 181
Query: 122 AIQTMD 127
QTM+
Sbjct: 182 LAQTME 187
>AT1G49030.1 | chr1:18136794-18137846 FORWARD LENGTH=225
Length = 224
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 17/98 (17%)
Query: 12 PCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVAC-YACGYR 70
P FG+ A+ + G A SC T ML+GL+ CC+F A+ C Y C +R
Sbjct: 109 PFVTFGQIAEVIDEG--ATSCGTAGMLYGLI---CCLF-----------AIPCVYTCTFR 152
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
LR+KY LP+AP D TH FC CA+CQEYRE++ R
Sbjct: 153 TKLRSKYGLPDAPAPDWITHCFCEYCALCQEYRELKNR 190
>AT3G18460.1 | chr3:6333048-6333948 REVERSE LENGTH=185
Length = 184
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 25/124 (20%)
Query: 12 PCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYRQ 71
PC G+ A+ + G A C T +L+G++ + F Y+C +R
Sbjct: 75 PCVTLGQIAEIVDEG--ATPCATGGLLYGMIFFIGVPFV--------------YSCMFRA 118
Query: 72 ALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER---------TDSGSSAPTVTPPA 122
+R KY LP+AP D THLFC CA+CQEYRE++ R + + P ++PP
Sbjct: 119 KMRNKYGLPDAPAPDWITHLFCEHCALCQEYRELKHRGFDPNIGWAGNVQAQQPVMSPPT 178
Query: 123 IQTM 126
Q M
Sbjct: 179 GQRM 182
>AT3G18470.1 | chr3:6335000-6335698 REVERSE LENGTH=134
Length = 133
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 21/122 (17%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
CPC FGR A G T C G+ L C G L ++C YR
Sbjct: 25 CPCVTFGRIADISDEGR------TGCGRCGVFYGLICCVVGLPCL---------FSCTYR 69
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER------TDSGSSAPTVTPPAIQ 124
+R+K+ LPE+P D TH FC CA+CQE+RE++ R SG+ T+ PP Q
Sbjct: 70 TKIRSKFGLPESPTSDCVTHFFCECCALCQEHRELKTRGLDPSIGWSGNMQRTMAPPMSQ 129
Query: 125 TM 126
M
Sbjct: 130 QM 131
>AT2G45010.1 | chr2:18568045-18569615 FORWARD LENGTH=245
Length = 244
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 8 GATCPCFLFGRNAQFLGSG---TLAGSCTTHCMLWGL-LTSLCCVFTGGL-----VLAVP 58
G CPC LFGRN + + T C C+ G+ L ++ +F+G + V+
Sbjct: 79 GLFCPCVLFGRNIEAVREEIPWTQPCVCHAVCVEGGMALAAVTALFSGYIDPQTTVVICE 138
Query: 59 GSAVACYACG-----YRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER--TDS 111
G A + CG +RQ L+ KY+L APC H H CA+CQE+RE++
Sbjct: 139 GLFFAWWMCGIYSGLFRQELQKKYHLKNAPCDHCMVHCCLHWCALCQEHREMKNHLSDTE 198
Query: 112 GSSAPTVTPPAIQTMD 127
SS+ T+ PP +Q M+
Sbjct: 199 ASSSTTMDPPPVQEMN 214
>AT1G58320.1 | chr1:21634123-21635303 REVERSE LENGTH=149
Length = 148
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVAC---YAC 67
CPC FGR A+ L G + G +V+A+ S++ C YA
Sbjct: 38 CPCVAFGRIAEILDKGETSRG-----------------LAGLMVVAM--SSIGCGWYYAS 78
Query: 68 GYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
YR LR +Y LPEAPC D H FC CA+ QE+RE++ R
Sbjct: 79 KYRAKLRHQYALPEAPCADGAIHCFCCPCALTQEHRELKHR 119
>AT1G68630.1 | chr1:25768653-25769458 FORWARD LENGTH=162
Length = 161
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 54/125 (43%), Gaps = 26/125 (20%)
Query: 9 ATCPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACG 68
A PC F +N + + GT+ CM GL+ L F G L YA
Sbjct: 47 AIMPCVSFAQNVEIVNRGTIP------CMNAGLI-HLALGFIGCSWL---------YAFP 90
Query: 69 YRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTDSGS----------SAPTV 118
R LR + LPE PC D HLFC CAICQE RE++ R S S V
Sbjct: 91 NRSRLREHFALPEEPCRDFLVHLFCTPCAICQESRELKNRGADPSIGWLSNVEKWSREKV 150
Query: 119 TPPAI 123
TPP +
Sbjct: 151 TPPIV 155
>AT3G18450.1 | chr3:6331229-6332118 REVERSE LENGTH=185
Length = 184
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
PC FG+ A+ + G A C T +L+G L FTG A Y+ +R
Sbjct: 72 APCVTFGQIAEIVDEG--ATPCATAGLLYGAL-----FFTG---------ASFVYSYMFR 115
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
+R K+ LP+AP D THL C A+CQEYRE++
Sbjct: 116 ARIRKKFGLPDAPAPDWITHLVCMPFALCQEYRELKHH 153
>AT1G14870.1 | chr1:5128591-5129458 REVERSE LENGTH=153
Length = 152
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
CPC FG+ A+ + G+ T C G L +L V TG + Y+C YR
Sbjct: 36 CPCITFGQVAEIVDRGS------TSCGTAGALYALIAVVTGCACI---------YSCFYR 80
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
+RA+YN+ C D H C LC++ Q+YRE++ R
Sbjct: 81 GKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHR 118
>AT5G51400.1 | chr5:20878784-20880036 REVERSE LENGTH=242
Length = 241
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 6 FIGATCPCFLFGRNAQFLGSG--TLAGSCTTHCML-WGLLTS---LCCV---FTGGLVLA 56
++G CP LFGR + L + +C H ++ G LT+ L CV +L
Sbjct: 77 WLGLFCPSVLFGRVYETLSDEETSWKKACICHSIVVEGGLTAASMLACVPGIDPHTSLLI 136
Query: 57 VPGSAVACYACG-----YRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTDS 111
G + CG RQ L+ KY+L APC H H CA+CQE+RE++ R
Sbjct: 137 WEGLLFVWWMCGIYTGNVRQTLQRKYHLQNAPCDPCMVHCCLHFCAVCQEHREMKNRLSD 196
Query: 112 GSSAP--TVTPPAIQTM 126
P + PP +Q M
Sbjct: 197 NFVMPMTVINPPPVQEM 213
>AT2G37110.1 | chr2:15592689-15593726 FORWARD LENGTH=243
Length = 242
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 62/150 (41%), Gaps = 37/150 (24%)
Query: 6 FIGATCPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACY 65
+G+ PC L+G NA+ LGS G+ + HC LT L F G + +
Sbjct: 98 LLGSVAPCVLYGTNAERLGSA--PGTFSNHC-----LTYLGLYFVGNSLFGW-NCLAPWF 149
Query: 66 ACGYRQALRAKYNLP------EAPCG-------------------DLTTHLFCHLCAICQ 100
+ R A+R K+NL CG D TH+ CH CA+CQ
Sbjct: 150 SYSSRSAIRRKFNLEGSFEAMNRSCGCCGGCIEDEMQREHLETTCDFVTHVLCHTCALCQ 209
Query: 101 EYREIRERT----DSGSSAPTVTPPAIQTM 126
E RE+R + + S V PP QTM
Sbjct: 210 EGRELRRKVLHPGFNAQSTVVVMPPIEQTM 239
>AT5G35525.1 | chr5:13707084-13707818 FORWARD LENGTH=153
Length = 152
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
CPC FG+ A + G SC T L+ LL ++ TG L Y+C YR
Sbjct: 36 CPCITFGQVADIVDRGNT--SCGTAGALYVLLAAI----TGCGCL---------YSCIYR 80
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
+RA+YN+ C D H C LCA+ QEYRE++ R
Sbjct: 81 GKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKHR 118
>AT1G52200.1 | chr1:19442271-19443407 REVERSE LENGTH=191
Length = 190
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 12 PCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYRQ 71
PC FG+ A+ + G + T L ++ +LC + G YR+
Sbjct: 74 PCVTFGQIAEVMDEGEMTCPLGTFMYLL-MMPALCSHWVMG--------------SKYRE 118
Query: 72 ALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERT 109
+R K+NL EAP D +H+ C C++CQEYRE++ R
Sbjct: 119 KMRRKFNLVEAPYSDCASHVLCPCCSLCQEYRELKIRN 156
>AT1G68610.1 | chr1:25763623-25764105 FORWARD LENGTH=161
Length = 160
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACYACGYR 70
CPC FGR A+ + G+ T C + G + + + TG GS++ Y+C YR
Sbjct: 39 CPCVAFGRIAEVVDRGS------TSCGVSGAMYMIIFMLTG-----YGGSSL--YSCFYR 85
Query: 71 QALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTD 110
LRA+YNL E PC D H C CA+CQEYR+++ D
Sbjct: 86 TKLRAQYNLKERPCCDCCVHFCCEPCALCQEYRQLQHNRD 125
>AT1G14880.1 | chr1:5132791-5133663 REVERSE LENGTH=152
Length = 151
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 11 CPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVP--GSAVACYACG 68
CPC FG+ A+ + G+ + C G L + + S YAC
Sbjct: 35 CPCITFGQVAEIVDRGSKS-----------------CCAAGALYMLIDLITSCGRMYACF 77
Query: 69 YRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
Y +RA+YN+ C D H C+LCA+ Q+YRE++ R
Sbjct: 78 YSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKHR 117
>AT4G35920.1 | chr4:17012106-17014192 REVERSE LENGTH=422
Length = 421
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 64 CYACGYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRERTDSGSSAPTVTPPAI 123
CY C R+ LR N+ D +H+ C CA+ QE RE+ R G+ ++PP+
Sbjct: 357 CYTCCVRRKLRKTLNITGGFIDDFLSHVMCCCCALVQELREVEIRGAYGTEKTKISPPSS 416
Query: 124 QTMD 127
Q M+
Sbjct: 417 QFME 420
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,018,320
Number of extensions: 118688
Number of successful extensions: 332
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 16
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 106 (45.4 bits)