BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0266800 Os01g0266800|AK069474
(420 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41050.1 | chr2:17123388-17125622 REVERSE LENGTH=377 288 6e-78
AT4G36850.1 | chr4:17353415-17355822 REVERSE LENGTH=393 167 1e-41
AT4G20100.1 | chr4:10873999-10874865 REVERSE LENGTH=289 150 2e-36
>AT2G41050.1 | chr2:17123388-17125622 REVERSE LENGTH=377
Length = 376
Score = 288 bits (736), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 176/383 (45%), Positives = 222/383 (57%), Gaps = 36/383 (9%)
Query: 34 STRDGMALTLGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMTWIVGDFFNLIGCFLE 93
S RDG++L+LG++SVISWGVAE+PQI+TNY KSTEGLS+ FL TW++GD FNL+GC +E
Sbjct: 6 SFRDGLSLSLGIISVISWGVAEIPQIMTNYSEKSTEGLSITFLTTWMIGDIFNLLGCLME 65
Query: 94 PETLPTQFYMALLYTITTVILTGQTVYYSHIYHRLKAKKARATSKPQRHQRADASLREKL 153
P TLPTQFYMALLYT+TT +L Q++YY HIY RLK + R Q +A +
Sbjct: 66 PATLPTQFYMALLYTVTTSVLYVQSIYYGHIYPRLKNR---------RDQMVEAERISNI 116
Query: 154 LGP-KVIGEIRNNSHL----GATVPIPTSSPITVNTEIVRQRHGPSSLSEYYYTSARSLS 208
+ K+ G RN+S G T PI T P + T + E +YTSARSLS
Sbjct: 117 ISDVKIPGRWRNSSDTTTCGGQTTPI-TMIPGSQRTSFTGR--------ELFYTSARSLS 167
Query: 209 SSPVPMSGTWSANYHQTN-SPPEIDDQKESLVSEFSPAQYAASPLIKNSLSVVPWMSLLL 267
SS P +G+ A S P ++ E L+ E P K+ L VV L
Sbjct: 168 SSHTPPAGSVLAQRMARGYSEPTLE---EPLLPE-----DVTHPSTKSLLCVVSVFLFLG 219
Query: 268 GMSVLHFLVGTTHQEVPNG--IVIPVGXXXXXXADDHADXXXXXXXXXXXXXXXXWAMAV 325
++ + L + + G + + WAMA
Sbjct: 220 TFNLPNLLSESRTMALGEGDRVFVVRAARKLLQVTSSNVAEHSGGESSRIGMFLGWAMAA 279
Query: 326 IYMGGRLPQIWLNMKRGNAEGLNPLMFTFALVGNVTYVGSILVKSMDWSKLKPNLPWLVD 385
IYMGGRLPQI LNM+RG+ EGLNPLMF FALVGN+TYV SILV S++W KL PNLPWLVD
Sbjct: 280 IYMGGRLPQICLNMRRGHVEGLNPLMFFFALVGNMTYVASILVNSVEWLKLAPNLPWLVD 339
Query: 386 AGGCVLLDTFIILQFLYFHYRKR 408
AGGCV+LD I+LQF FH+R R
Sbjct: 340 AGGCVVLDFLILLQF--FHFRCR 360
>AT4G36850.1 | chr4:17353415-17355822 REVERSE LENGTH=393
Length = 392
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 116/195 (59%), Gaps = 26/195 (13%)
Query: 19 NCAKWAQTYLKYCLCSTRDGMALTLGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMT 78
C +W + Y CLC+ D ++ LG+ S++ WGVAE+PQ+ITN++ KS+ G+SL+FL+
Sbjct: 13 TCVRWVEIYFDDCLCNLNDDVSFALGIASLLCWGVAEIPQVITNFRTKSSNGVSLSFLLA 72
Query: 79 WIVGDFFNLIGCFLEPETLPTQFYMALLYTITTVILTGQTVYYSHIYHRLKAKKARATSK 138
W+ GD FNL+GC LEP TLPTQFY ALLYT++TV+L QT+YY +IY + ++ + K
Sbjct: 73 WVAGDIFNLVGCLLEPATLPTQFYTALLYTVSTVVLVIQTIYYDYIYKLCRHRRTKICQK 132
Query: 139 PQRHQRADASLREKLLGPKVIGEIRNNSHLGATVPIPTSSPITVNTEIVRQRHGPSSLSE 198
+ + + L PK +G+ + IP S + SS E
Sbjct: 133 DEEDEE-----KRPLKPPKT---------MGSAISIPGGS------------YKDSSRRE 166
Query: 199 YYYTSARSLSSSPVP 213
+YYTSARSL+ S P
Sbjct: 167 FYYTSARSLAGSGTP 181
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 72/85 (84%)
Query: 321 WAMAVIYMGGRLPQIWLNMKRGNAEGLNPLMFTFALVGNVTYVGSILVKSMDWSKLKPNL 380
W MA IYMGGR+PQIWLN+KRG+ EGLNPLMF FALV N TYVGSILV++ +W +KPNL
Sbjct: 282 WLMAAIYMGGRIPQIWLNIKRGSVEGLNPLMFIFALVANATYVGSILVRTTEWDNIKPNL 341
Query: 381 PWLVDAGGCVLLDTFIILQFLYFHY 405
PWL+DA CV+LD FIILQ++Y+ Y
Sbjct: 342 PWLLDAIVCVVLDLFIILQYIYYKY 366
>AT4G20100.1 | chr4:10873999-10874865 REVERSE LENGTH=289
Length = 288
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 79/99 (79%), Gaps = 4/99 (4%)
Query: 321 WAMAVIYMGGRLPQIWLNMKRGNAEGLNPLMFTFALVGNVTYVGSILVKSMDWSKLKPNL 380
WAMA IYMGGRLPQI +N++RGN EGLNPLMF FA +GNVTYV SILV S++WSK++PNL
Sbjct: 185 WAMAAIYMGGRLPQICMNVRRGNVEGLNPLMFFFAFIGNVTYVASILVNSVEWSKIEPNL 244
Query: 381 PWLVDAGGCVLLDTFIILQFLYFHYRKRHVPDEPDSADK 419
PWLVD+GGC +LD I+LQF YFH RK E DS K
Sbjct: 245 PWLVDSGGCAVLDFLILLQFFYFHCRKV----EADSVKK 279
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 86/124 (69%), Gaps = 10/124 (8%)
Query: 36 RDGMALTLGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMTWIVGDFFNLIGCFLEPE 95
RD ++L+LG++SVISW VAE+PQI+TNY KS EG+S+ FL TW++GD FN++GC +EP
Sbjct: 3 RDDLSLSLGIISVISWSVAEIPQIMTNYNQKSIEGVSITFLTTWMLGDIFNVVGCLMEPA 62
Query: 96 TLPTQFYMALLYTITTVILTGQTVYYSHIYHRLKAKKARATSKPQRHQRADAS---LREK 152
+LP QFY A+LYT+ T++L Q++YY HIY RL + + HQ D LRE+
Sbjct: 63 SLPVQFYTAVLYTLATLVLYVQSIYYGHIYPRLMKNR-------RNHQMVDVEEPLLREE 115
Query: 153 LLGP 156
P
Sbjct: 116 AKRP 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,104,875
Number of extensions: 376008
Number of successful extensions: 923
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 6
Length of query: 420
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 319
Effective length of database: 8,337,553
Effective search space: 2659679407
Effective search space used: 2659679407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)