BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0266600 Os01g0266600|AK069749
(198 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06050.1 | chr3:1826311-1827809 REVERSE LENGTH=202 289 8e-79
AT1G60740.1 | chr1:22361127-22361817 FORWARD LENGTH=163 114 5e-26
AT1G65970.1 | chr1:24557527-24558229 REVERSE LENGTH=163 112 2e-25
AT1G65980.1 | chr1:24559524-24560753 REVERSE LENGTH=163 110 4e-25
AT3G52960.1 | chr3:19639699-19640403 FORWARD LENGTH=235 101 3e-22
AT1G65990.1 | chr1:24571603-24573471 REVERSE LENGTH=554 75 2e-14
>AT3G06050.1 | chr3:1826311-1827809 REVERSE LENGTH=202
Length = 201
Score = 289 bits (739), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 138/169 (81%), Positives = 152/169 (89%)
Query: 30 VGSGSDIVSAAPGVSLQKARSWDEGVATNFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQA 89
+ G+DI SAAPGVSLQKARSWDEGV++ FSTTPL DIF GKKVVIFGLPGAYTGVCSQ
Sbjct: 33 LAEGTDITSAAPGVSLQKARSWDEGVSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQ 92
Query: 90 HVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQAKDAIEFYGDFDGSFHKSLDL 149
HVPSYK++IDK KAKG+DSVICVSVNDP+A+NGWAEKL AKDAIEFYGDFDG FHKSL L
Sbjct: 93 HVPSYKSHIDKFKAKGIDSVICVSVNDPFAINGWAEKLGAKDAIEFYGDFDGKFHKSLGL 152
Query: 150 EVDLSAALLGRRSHRWSAFVDDGKIKAFNVEVAPSDFKVSGAEVILDQI 198
+ DLSAALLG RS RWSA+V+DGK+KA NVE APSDFKV+GAEVIL QI
Sbjct: 153 DKDLSAALLGPRSERWSAYVEDGKVKAVNVEEAPSDFKVTGAEVILGQI 201
>AT1G60740.1 | chr1:22361127-22361817 FORWARD LENGTH=163
Length = 162
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 58 NFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDP 117
T + I GKKV++FG+PGA+T CS +HVP + ++LK+KG+D +IC SVNDP
Sbjct: 23 QLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDP 82
Query: 118 YALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAF 177
+ + W + Q ++F D G + L LE+DL LG RS R++ +D+ K+
Sbjct: 83 FVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVA 142
Query: 178 NVEVAPSDFKVSGAEVIL 195
NVE +F VS AE IL
Sbjct: 143 NVENG-GEFTVSSAEDIL 159
>AT1G65970.1 | chr1:24557527-24558229 REVERSE LENGTH=163
Length = 162
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 58 NFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDP 117
T + I GKKV++FG+PGA+T CS +HVP + ++LK+KG+D +IC SVNDP
Sbjct: 23 QLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDP 82
Query: 118 YALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAF 177
+ + W + ++F D G + L LE+DL LG RS R++ +D+ K+
Sbjct: 83 FVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVA 142
Query: 178 NVEVAPSDFKVSGAEVILDQI 198
NVE + +F VS AE IL +
Sbjct: 143 NVE-SGGEFTVSSAEDILKAL 162
>AT1G65980.1 | chr1:24559524-24560753 REVERSE LENGTH=163
Length = 162
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 1/138 (0%)
Query: 58 NFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDP 117
T + + GKKV++FG+PGA+T CS HVP + ++LK+KGVD +IC SVNDP
Sbjct: 23 QLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDP 82
Query: 118 YALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAF 177
+ + W + ++F D G + L LE+DL LG RS R++ +DD K+
Sbjct: 83 FVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLDDLKVTVA 142
Query: 178 NVEVAPSDFKVSGAEVIL 195
NVE + +F VS A+ IL
Sbjct: 143 NVE-SGGEFTVSSADDIL 159
>AT3G52960.1 | chr3:19639699-19640403 FORWARD LENGTH=235
Length = 234
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 61 TTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYAL 120
T + + GKK ++F +PGA+T CSQ HVP + + +L++KG+D + C+SVND + +
Sbjct: 96 TVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVM 155
Query: 121 NGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDL--SAALLGRRSHRWSAFVDDGKIKAFN 178
W + L D + D +G F L +E+DL LG RS R++ DDG +K N
Sbjct: 156 EAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLN 215
Query: 179 VE 180
+E
Sbjct: 216 LE 217
>AT1G65990.1 | chr1:24571603-24573471 REVERSE LENGTH=554
Length = 553
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 58 NFSTTPLKDIFHGKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDP 117
T + + GKKV++FG+PGA+ CS HV + ++LK+ GVD +IC+S +DP
Sbjct: 23 QLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDP 82
Query: 118 YALNGWAEKLQAKDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRSHRWSAFVDDGKIKAF 177
+ + +E K F D G + + L LE+++ LG RS ++ +D+ K+
Sbjct: 83 FMITACSENKHVK----FVEDGSGEYIQLLGLELEVKDKGLGVRSRGFALLLDNLKVIVV 138
Query: 178 NV 179
NV
Sbjct: 139 NV 140
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,860,616
Number of extensions: 159750
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 6
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)