BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0266500 Os01g0266500|AK101084
(309 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02860.1 | chr4:1268952-1270508 REVERSE LENGTH=314 275 2e-74
AT1G03210.1 | chr1:782948-784240 FORWARD LENGTH=287 258 2e-69
AT4G02850.1 | chr4:1266535-1268569 REVERSE LENGTH=307 242 2e-64
>AT4G02860.1 | chr4:1268952-1270508 REVERSE LENGTH=314
Length = 313
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/308 (48%), Positives = 194/308 (62%), Gaps = 20/308 (6%)
Query: 3 KNAIQYAVVDAFAAEPFKGNPAAVCLLEGXXXXXXXXXRWMQSVAAEFNLSETAFLIRXX 62
K ++Y VVDAF FKGNPAAVC L W+QS+AAEFN+SET FLI
Sbjct: 23 KKGVKYFVVDAFTDSAFKGNPAAVCFLNDDNERDDT---WLQSLAAEFNISETCFLI--- 76
Query: 63 XXXXXXXXXXXRFRLRWFTPVAEVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVTRS 122
RF LRWFTP+AEV+LCGHATLASAH LF+ L MVEFVTRS
Sbjct: 77 ----PITGFQARFSLRWFTPLAEVDLCGHATLASAHCLFSNGLVDSD-----MVEFVTRS 127
Query: 123 GILTAKKVXXXXXXXNDGGVPGEEKLFIELDFPMIDLVEYDSAETLS--IPETLNGARVV 180
GILTAK+V +DG V G IEL+FP++ + + ++ S I + LNGA +V
Sbjct: 128 GILTAKRVSDTSEL-SDGEVKGG-TFLIELNFPVVTTCDVNLSDVSSSMITKALNGATIV 185
Query: 181 SVWKSSTAGDLIVELSSGKEVADIIPNINEIKKCDGRGVIVTGPAPAGSDYDFFSRFFCP 240
+ K++ +++V L S + V ++ P +++I KC G+IVT GS YDF+SR+F P
Sbjct: 186 DI-KATATNNILVVLPSKESVTELQPRMDDILKCPCDGIIVTAAGSTGSSYDFYSRYFAP 244
Query: 241 KFGIDEDPVCGSAHCVLAPYWGGKLGKQKLTAFQASPRSGTLYLELDGENRRVRIQGEAV 300
KFG+DEDPVCGSAHC LA YW K+ K A+QAS RSGT+ + LD E +RV ++G+AV
Sbjct: 245 KFGVDEDPVCGSAHCALAHYWSIKMNKFDFLAYQASSRSGTIRIHLDKEKQRVLLRGKAV 304
Query: 301 TVMAGTLL 308
TVM G +L
Sbjct: 305 TVMEGHVL 312
>AT1G03210.1 | chr1:782948-784240 FORWARD LENGTH=287
Length = 286
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/308 (49%), Positives = 188/308 (61%), Gaps = 28/308 (9%)
Query: 3 KNAIQYAVVDAFAAEPFKGNPAAVCLLEGXXXXXXXXXRWMQSVAAEFNLSETAFLIRXX 62
K ++Y +VDAFA FKGNPAAVC LE W+QS+A EFN+SET FL
Sbjct: 4 KKRVKYFIVDAFAESAFKGNPAAVCFLEDDNERDDA---WLQSLATEFNISETCFL---- 56
Query: 63 XXXXXXXXXXXRFRLRWFTPVAEVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVTRS 122
RFRLRWFTPVAEV+LCGHATLASAH LF+T L + VEF T S
Sbjct: 57 ---TPIIGDLPRFRLRWFTPVAEVDLCGHATLASAHVLFSTGLVGSE-----TVEFDTLS 108
Query: 123 GILTAKKVXXXXXXXNDGGVPGEEKLFIELDFPMIDLVE--YDSAETLSIPETLNGARVV 180
GILTAK + ND GEE IELDFP++ E Y + + LNGA ++
Sbjct: 109 GILTAKHLK------NDDD--GEESS-IELDFPVVPTYEVNYIDDDLSLFSKALNGATIL 159
Query: 181 SVWKSSTAGDLIVELSSGKEVADIIPNINEIKKCDGRGVIVTGPAPAGSDYDFFSRFFCP 240
V +T DL+V LSS + V D+ P ++EI KC G++VT A GS YDF SR+F P
Sbjct: 160 DV--KATKKDLLVVLSSWEAVIDLKPRLDEISKCPCEGMMVTAAASDGSTYDFCSRYFAP 217
Query: 241 KFGIDEDPVCGSAHCVLAPYWGGKLGKQKLTAFQASPRSGTLYLELDGENRRVRIQGEAV 300
+FGI+EDPV GSAHC LA YW ++ K A+QAS R GTL + LD E +RV ++G+AV
Sbjct: 218 RFGINEDPVTGSAHCALAHYWSLRMNKCDFFAYQASSRGGTLKVHLDKEKQRVLLRGKAV 277
Query: 301 TVMAGTLL 308
TVM G +L
Sbjct: 278 TVMEGYVL 285
>AT4G02850.1 | chr4:1266535-1268569 REVERSE LENGTH=307
Length = 306
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 184/324 (56%), Gaps = 38/324 (11%)
Query: 1 MVKNAIQYAVVDAFAAEPFKGNPAAVCLLEGXXXXXXXXXRWMQSVAAEFNLSETAFLIR 60
+VK ++Y +VDAF FKGN AAVC LE W+QS+A+EF+L T FLI
Sbjct: 4 LVKKPVKYFMVDAFTESAFKGNQAAVCFLEEDHERDDV---WLQSMASEFDLPLTCFLI- 59
Query: 61 XXXXXXXXXXXXXRFRLRWFTPVAEVNLCGHATLASAHFLFTTVLAKQQHAAAAMVEFVT 120
RF LRWFT VAE+++CGHATLASAH +F+ L ++ VEF T
Sbjct: 60 -----PIPGSEPPRFLLRWFTAVAEMDICGHATLASAHSIFSNSLV----GSSDTVEFST 110
Query: 121 RSGILTAKKVXXXXXXXNDGGVPGEEKLFIELDFPMIDLVEYDSAETLSIPETLNGARVV 180
SGILTAK++ + IE++FP+I EY S + + LNGA +V
Sbjct: 111 NSGILTAKRL---------SDCDSKRSFLIEMNFPVITTCEYSSKDVSIFSKALNGATIV 161
Query: 181 SV----------------WKSSTAGDLIVELSSGKEVADIIPNINEIKKCDGRGVIVTGP 224
V +K+++ +IV LSS + V + P +++I KC G+ +IVT
Sbjct: 162 DVRETKTDRLIFKPLIGAFKTTSTDQIIVVLSSWESVIEFQPRVDDIVKCPGKVMIVTAA 221
Query: 225 APAGSDYDFFSRFFCPKFGIDEDPVCGSAHCVLAPYWGGKLGKQKLTAFQASPRSGTLYL 284
AP GS +DF SR F PK G++ED VCGSAHC LA YW K+ K AF AS RSGTL +
Sbjct: 222 APQGSPFDFCSRLFAPKLGLNEDSVCGSAHCSLAHYWSLKMNKCDFVAFAASQRSGTLKV 281
Query: 285 ELDGENRRVRIQGEAVTVMAGTLL 308
D E +RV + G+AVTVM G++L
Sbjct: 282 HYDKEKQRVLLTGKAVTVMKGSIL 305
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,746,713
Number of extensions: 218664
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 3
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)