BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0263500 Os01g0263500|Os01g0263500
         (311 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09180.1  | chr3:2819278-2821096 FORWARD LENGTH=403            285   3e-77

>AT3G09180.1 | chr3:2819278-2821096 FORWARD LENGTH=403
          Length = 402

 Score =  285 bits (728), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/321 (51%), Positives = 202/321 (62%), Gaps = 34/321 (10%)

Query: 17  MKFAGRQLEESGVLNGALKARGNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTR 76
           ++  G++LEESGVL  +L++R NSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTR
Sbjct: 88  LRLIGKKLEESGVLTESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTR 147

Query: 77  LALKAFTDQKRRFFPHLDDEGFNHLHDGEPGLAKKPR---LPASNGE---LEERTLSEIL 130
           LALKAFTDQKRRFFPH+DD G       EP  +KK R   L   NG    ++ +TL +I 
Sbjct: 148 LALKAFTDQKRRFFPHIDD-GLKM----EPS-SKKHRASHLLLENGREEPVDYKTLPDIQ 201

Query: 131 KNLENEVPNMKIFTYRRLDWSKRAASLATLMNDDFVDPSKELNLQNMSKSGSG-DTTPID 189
             LE  VP++K+ TY RL+W KRA SL    +DD  + SK +  Q+ SK  SG  T  +D
Sbjct: 202 SRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPI-FQSSSKLRSGLQTEVVD 260

Query: 190 QVAIIELLAPSIFRAIVSLHPAGSTDPDAVAFFSPTE--------------------EHA 229
           ++A+IEL  PS+FRAIVSL PAGS DPDAVAFFSP E                    EHA
Sbjct: 261 KIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHITEHA 320

Query: 230 DKALQYFVSVEPTKSLSLLLRWIASYQTLFTKVCSKCGRXXXXXXXXXXXXPPVQRPYHH 289
             ALQYF+      +L  LL WI S++++F+K C+KCGR            PP+ R Y  
Sbjct: 321 ATALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSALILPPLHRAYQE 380

Query: 290 QTSSVGSDPQDAYHIGCSSYD 310
              ++  D  +AYH  CS  D
Sbjct: 381 LPLALNLDVCEAYHSSCSQDD 401



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,801,876
Number of extensions: 274531
Number of successful extensions: 696
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)