BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0261900 Os01g0261900|Os01g0261900
(193 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303 70 8e-13
AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591 67 6e-12
AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592 50 6e-07
>AT3G47680.1 | chr3:17577483-17578391 REVERSE LENGTH=303
Length = 302
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 70 KKRLLWTNDEDLRLISAWLNNSNDSIESNFKKNDKYWGDVAAAYNSTTPKSRV--RQVKQ 127
++R W+ EDL L+SAWLN S D++ N +K +W +AA Y ++ + V R+
Sbjct: 45 RERRKWSAGEDLVLVSAWLNTSKDAVIGNEQKGYAFWSRIAAYYGASPKLNGVEKRETGH 104
Query: 128 VKDRFGKIKKKVGNFCCSWKEANSLYASGESHDDLMAKAVKMYEND 173
+K R+ KI + VG F S++ A +SG++ DD++A A ++Y ++
Sbjct: 105 IKQRWTKINEGVGKFVGSYEAATKQKSSGQNDDDVVALAHEIYNSE 150
>AT5G41220.1 | chr5:16494560-16496969 REVERSE LENGTH=591
Length = 590
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 53 GSPSQPINVENGDISRTKKRLLWTNDEDLRLISAWLNNSNDSIESNFKKNDKYWGDVAAA 112
G S N+ R K R W+ ED LISAWLN S D I N K +W + A
Sbjct: 251 GEKSDDPNLVQNTTDRRKHRRKWSRAEDAILISAWLNTSKDPIVDNEHKACAFWKRIGAY 310
Query: 113 YNSTTPKSRV--RQVKQVKDRFGKIKKKVGNFCCSWKEANSLYASGESHDDLMAKAVKMY 170
+N++ + + R+ K R+ K+ KV F + +A + +SG+S DD+ A ++Y
Sbjct: 311 FNNSASLANLPKREPSHCKQRWSKLNDKVCKFVGCYDQALNQRSSGQSEDDVFQVAYQVY 370
Query: 171 ENDFK 175
N++K
Sbjct: 371 TNNYK 375
>AT5G41240.1 | chr5:16498293-16500811 REVERSE LENGTH=592
Length = 591
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 53 GSPSQPINVENGDISRTKKRLLWTNDEDLRLISAWLNNSNDS--IESNFKKNDKYWGDVA 110
G S N+ R +R W+ +D+ LISAWLN S D + + ++ +W +
Sbjct: 251 GGTSDGPNLVQDTTDRKARRRKWSPPDDVILISAWLNTSKDRKVVVYDEQQAHTFWKRIG 310
Query: 111 AAYNSTTPKSRV--RQVKQVKDRFGKIKKKVGNFCCSWKEANSLYASGESHDDLMAKAVK 168
A +++ + + R+ + R+ KI V F + +A + ASG+S DD+ A +
Sbjct: 311 AHVSNSASLANLPKREWNHCRQRWRKINDYVCKFVGCYDQALNQRASGQSEDDVFQVAYQ 370
Query: 169 MYENDF 174
+Y N++
Sbjct: 371 LYYNNY 376
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,846,480
Number of extensions: 217256
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 3
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)