BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0256600 Os01g0256600|AK063884
         (114 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27820.1  | chr5:9860584-9860928 FORWARD LENGTH=115            178   6e-46
AT3G20230.1  | chr3:7055639-7056679 REVERSE LENGTH=188             72   4e-14
AT1G08845.2  | chr1:2838789-2840955 FORWARD LENGTH=235             54   1e-08
AT3G45020.1  | chr3:16469167-16469568 REVERSE LENGTH=134           53   4e-08

>AT5G27820.1 | chr5:9860584-9860928 FORWARD LENGTH=115
          Length = 114

 Score =  178 bits (451), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 99/114 (86%)

Query: 1   MVIPPPERAARITRFLKPYLLRMHFSNKYVSAQVVHTPTATVACSASSQEKLLRPNMEST 60
           MVIPP  R  R+  +LKPY+L+MHF+NK+V AQV+H+PTATVACSASSQEK LR  M+ T
Sbjct: 1   MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60

Query: 61  RDVAAAAKIGKLLGERLLQKGIPAVCIHMKREQKYHGKVRAVIDSVREAGVKLL 114
           RDVAAA+KIGK+LGERLL K IPAV I MK+EQ+YHGKV+AVIDSVREAGVKLL
Sbjct: 61  RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114



>AT3G20230.1 | chr3:7055639-7056679 REVERSE LENGTH=188
          Length = 187

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 62/101 (61%)

Query: 11  RITRFLKPYLLRMHFSNKYVSAQVVHTPTATVACSASSQEKLLRPNMESTRDVAAAAKIG 70
           R   +++P+LL + FS K++ A+V+H PT+ V   A++  + +R N+ S  D  A   IG
Sbjct: 83  RTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIG 142

Query: 71  KLLGERLLQKGIPAVCIHMKREQKYHGKVRAVIDSVREAGV 111
           KL+ ER ++  + AV    ++ ++  GK+  VID+++E G+
Sbjct: 143 KLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183



>AT1G08845.2 | chr1:2838789-2840955 FORWARD LENGTH=235
          Length = 234

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 53/103 (51%)

Query: 11  RITRFLKPYLLRMHFSNKYVSAQVVHTPTATVACSASSQEKLLRPNMESTRDVAAAAKIG 70
           R   +++P+ L +  S ++VSA + H  T      A +  K ++  + S  D+ A   IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186

Query: 71  KLLGERLLQKGIPAVCIHMKREQKYHGKVRAVIDSVREAGVKL 113
           ++L ER  +  +       + + K+ GK+RAV+ S+ + G+ +
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 229



>AT3G45020.1 | chr3:16469167-16469568 REVERSE LENGTH=134
          Length = 133

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 14/112 (12%)

Query: 16  LKPYLLRMHFSNKYVSAQVVHTPTATVACSASSQEKLLRPNMESTR--DVAAAAKIGKLL 73
           LK Y+LR+  S KY++A VV      +  +AS+ E  ++ ++E  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 74  GERL----LQKGIPAVCIH--MKREQKYHG-----KVRAVIDSVREAGVKLL 114
             RL    LQ G     IH  +K+E +  G     KV AVI+S+R  GV L+
Sbjct: 64  AMRLKVEGLQDG-QGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,256,556
Number of extensions: 70249
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)