BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0253900 Os01g0253900|AK067101
(596 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02660.1 | chr1:572187-574746 REVERSE LENGTH=714 469 e-132
AT3G62590.1 | chr3:23147973-23150169 REVERSE LENGTH=650 451 e-127
AT3G61680.1 | chr3:22824630-22826926 FORWARD LENGTH=650 363 e-100
>AT1G02660.1 | chr1:572187-574746 REVERSE LENGTH=714
Length = 713
Score = 469 bits (1206), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/460 (51%), Positives = 306/460 (66%), Gaps = 22/460 (4%)
Query: 56 FDRATFSRLLRKVSLGEAKEFSKMSYLCNIAYMIPKITP-KLLRRYNLRFVTSSVQEKAK 114
DR +FS+LLR+V+L E+K ++++SYL N+AY I KI P L + Y LRFVTSS ++
Sbjct: 172 LDRESFSKLLRRVTLPESKLYAQLSYLGNLAYSISKIKPANLSKYYGLRFVTSSAEKT-- 229
Query: 115 TGVDQKQELKTEEGESSDQESEVVENPEPGSNKKKESGLGVNPFGAYHVMSSAASYLHSR 174
+ LK E GE S + +VE E ++K ++ AY +++SAASYLHSR
Sbjct: 230 -----ESALKAENGEVSGETKPIVEAEEEVEEEEKNKSRKISASAAYEIVASAASYLHSR 284
Query: 175 AMGVVPFGSRNDGKN-DPTIMAIVNGESGEGLTMDEASFVATTNSVTSMVAAKEETRQAV 233
++PF S + +N D + + N ES + SVTS+VAA+E+ +QAV
Sbjct: 285 TNNILPFNSSSKAENSDKHDVNLTNAESSSDVAY----------SVTSVVAAEEDVKQAV 334
Query: 234 ADDLNSSRSCPCEWFICDDDQGSTRYFVVQGSESIASWQANLLFEPVKFEGLDVLVHRGI 293
ADDL S+ S PC+WFICDDDQ TR+ V+QGSES+ASWQANLLFEP++FEGL +VHRGI
Sbjct: 335 ADDLKSTISSPCDWFICDDDQSHTRFVVIQGSESLASWQANLLFEPIEFEGLGAIVHRGI 394
Query: 294 YEAAKGMYHQMLPYVKSHLRSSGKSATLRFTGHXXXXXXXXXXXXXXXXRGAAPASSLLP 353
YEAAKGMY QMLP VK+H+++ G SA RFTGH RG PASSLLP
Sbjct: 395 YEAAKGMYEQMLPEVKAHIKTHGTSAKFRFTGHSLGGSLSLLLNLMLLVRGEVPASSLLP 454
Query: 354 VITFGAPCIMCGGDHLLRKLGLPRNHVQSVTMHRDIVPRVFSCNYPDHVANILKLANGNF 413
VIT+GAP ++CGGD LL+KLGLP++HVQ++ MHRDIVPR FSCNYP HVA +LK NGNF
Sbjct: 455 VITYGAPFVLCGGDRLLKKLGLPKSHVQAIVMHRDIVPRAFSCNYPYHVAELLKAVNGNF 514
Query: 414 RSHPCLTNQKLLYAPMGEMFILQPDKRLSPHHDLLPPDSGIYHXXXXXXX---XXXXXXX 470
RSHPCL Q +LY+PMGE+ ILQPD+ SP H+LLP +G+Y
Sbjct: 515 RSHPCLNKQSMLYSPMGELLILQPDETFSPGHELLPSGNGLYLLTSDFESPDIEDSDEER 574
Query: 471 XXXAMSTFFNSPHPLEILKDKSAYGPKGAVYRDHDVNSYL 510
A + F N+PHPL+IL D+SAYG G + RDHD+NSYL
Sbjct: 575 LRAAQTVFLNTPHPLDILSDRSAYGSSGTIQRDHDMNSYL 614
>AT3G62590.1 | chr3:23147973-23150169 REVERSE LENGTH=650
Length = 649
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/452 (51%), Positives = 296/452 (65%), Gaps = 44/452 (9%)
Query: 61 FSRLLRKVSLGEAKEFSKMSYLCNIAYMIPKITPKLLRRYN-LRFVTSSVQEKAKTGVDQ 119
FS +L K+ + +A+ F+K+S+L N+AY IPKI P+ L +Y LRFVTSS++++ V++
Sbjct: 157 FSEMLSKIPVEDAQMFAKLSFLGNLAYSIPKIKPENLLKYQKLRFVTSSIEKRMSLKVEE 216
Query: 120 KQELKTEEGESSDQESEVVENPEPGSNKKKESGLGVNPFGAYHVMSSAASYLHSRAMGVV 179
+ + KKK +NP AY + +SAAS L S + V+
Sbjct: 217 NNNGEED------------------EEKKKL----INPAVAYRIAASAASRLFSHSKSVL 254
Query: 180 PFGSRNDGKNDPTIMAIVNGESGEGLTMDEASFVATTNSVTSMVAAKEETRQAVADDLNS 239
PFGS N+ EAS +AT +SVT++VAAKEE +QAVADDL S
Sbjct: 255 PFGSSKRQDNE------------------EASLLATADSVTAVVAAKEEVKQAVADDLKS 296
Query: 240 SRSCPCEWFICDDDQGSTRYFVVQGSESIASWQANLLFEPVKFEGLDVLVHRGIYEAAKG 299
+RS PCEWF+CDDD+ TR+F +QGS+S+ASWQANLLFEPV FE LDVLVHRGIYEAAKG
Sbjct: 297 NRSPPCEWFVCDDDKSGTRFFFIQGSDSLASWQANLLFEPVPFEDLDVLVHRGIYEAAKG 356
Query: 300 MYHQMLPYVKSHLRSSGKS-ATLRFTGHXXXXXXXXXXXXXXXXRGAAPASSLLPVITFG 358
+Y QMLP V +HL S GK+ A LRF+GH RG PASSLLPVITFG
Sbjct: 357 IYEQMLPEVHAHLNSRGKNRAFLRFSGHSLGGSLSLLVNLMLLIRGQVPASSLLPVITFG 416
Query: 359 APCIMCGGDHLLRKLGLPRNHVQSVTMHRDIVPRVFSCNYPDHVANILKLANGNFRSHPC 418
+PCIMCGGD LL+KLGLP++H+ ++MHRDIVPR FSCNYP+ A +LK NGNFR+HPC
Sbjct: 417 SPCIMCGGDRLLQKLGLPKSHLLGISMHRDIVPRAFSCNYPNRAAKLLKALNGNFRNHPC 476
Query: 419 LTNQKLLYAPMGEMFILQPDKRLSPHHDLLPPDSGIYHXXXXXXXXXXXXXXXXXAMSTF 478
L NQ +LY+PMG++ ILQP +R SP H LLPP SG+Y A F
Sbjct: 477 LNNQNVLYSPMGKLLILQPSERFSPPHPLLPPGSGLY--LLASKNTDETEKSLRAAKILF 534
Query: 479 FNSPHPLEILKDKSAYGPKGAVYRDHDVNSYL 510
FNSPHPLEIL D+ +YG +G + R+HD++SYL
Sbjct: 535 FNSPHPLEILSDRRSYGSEGKIKRNHDMSSYL 566
>AT3G61680.1 | chr3:22824630-22826926 FORWARD LENGTH=650
Length = 649
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 199/456 (43%), Positives = 271/456 (59%), Gaps = 36/456 (7%)
Query: 56 FDRATFSRLLRKVSLGEAKEFSKMSYLCNIAYMIPKITPKLLRR-YNLRFVTSSVQEKAK 114
+ R +FSRLL KVS EAK+ S+++YLCN+AY IP+I + LRR Y L+FVTSS+++KAK
Sbjct: 179 WGRESFSRLLVKVSWSEAKKLSQLAYLCNLAYTIPEIKGEDLRRNYGLKFVTSSLEKKAK 238
Query: 115 TGVDQKQELKTEEGESSDQESEVVENPEPGSNKKKESGLGVNPFGAYHVMSSAASYLHSR 174
+ + E+ E V+ +P+ S K+ + + AY + +SAASY+HS
Sbjct: 239 AAILR------EKLEQDPTHVPVITSPDLESEKQSQRSASSS-ASAYKIAASAASYIHS- 290
Query: 175 AMGVVPFGSRNDGKNDPTIMAIVNGESGEGLTMDEASFVATTNSVTSMVAAKEETRQAVA 234
+ E + A+ A +++T++VAA EE + A
Sbjct: 291 ---------------------CKEYDLSEPIYKSAAAAQAAASTMTAVVAAGEEEKLEAA 329
Query: 235 DDLNSSRSCPCEWFICDDDQGSTRYFVVQGSESIASWQANLLFEPVKFEGLDVLVHRGIY 294
+L S +S PCEWF+CDD TR FV+QGS+S+ASW+ANL FEP KFE DVLVHRGIY
Sbjct: 330 RELQSLQSSPCEWFVCDDPNTYTRCFVIQGSDSLASWKANLFFEPTKFEDTDVLVHRGIY 389
Query: 295 EAAKGMYHQMLPYVKSHLRSSGKSATLRFTGHXXXXXXXXXXXXXXXXRGAAPASSLLPV 354
EAAKG+Y Q LP + HL G A +FTGH RG + ++ V
Sbjct: 390 EAAKGIYEQFLPEITEHLSRHGDRAKFQFTGHSLGGSLSLIVNLMLISRGLVSSEAMKSV 449
Query: 355 ITFGAPCIMCGGDHLLRKLGLPRNHVQSVTMHRDIVPRVFSCNYPDHVANILKLANGNFR 414
+TFG+P + CGG+ +L +LGL +HV V MHRDIVPR FSCNYPDHVA +LK NG+FR
Sbjct: 450 VTFGSPFVFCGGEKILAELGLDESHVHCVMMHRDIVPRAFSCNYPDHVALVLKRLNGSFR 509
Query: 415 SHPCLTNQKLLYAPMGEMFILQPDKRLSPHHDLLPPDSGIYHXXXXXXXXXXXXXXXXXA 474
+HPCL KLLY+PMG+++ILQP + +SP H LPP + +Y A
Sbjct: 510 THPCLNKNKLLYSPMGKVYILQPSESVSPTHPWLPPGNALY------ILENSNEGYSPTA 563
Query: 475 MSTFFNSPHPLEILKDKSAYGPKGAVYRDHDVNSYL 510
+ F N PHPLE L ++AYG +G+V RDHD +Y+
Sbjct: 564 LRAFLNRPHPLETLSQRAAYGSEGSVLRDHDSKNYV 599
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,646,438
Number of extensions: 378689
Number of successful extensions: 1405
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1390
Number of HSP's successfully gapped: 3
Length of query: 596
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 492
Effective length of database: 8,255,305
Effective search space: 4061610060
Effective search space used: 4061610060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)