BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0252600 Os01g0252600|009-015-C12
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01935.1  | chr4:841102-842228 FORWARD LENGTH=257              146   2e-36
>AT4G01935.1 | chr4:841102-842228 FORWARD LENGTH=257
          Length = 256

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 82/105 (78%)

Query: 13  LAVFIEASAEMYRAGVPSNVEAYVLFAGAELAWLLLDGTWLGFAVACLVGTACPLAEIPL 72
           L  F+E SAEMY+AGV  N+EAY+LFA AE  W  LD TW+ F +A L+G ACPLAEIP+
Sbjct: 135 LMFFLELSAEMYKAGVSDNIEAYILFALAEFIWFSLDRTWICFTIATLLGVACPLAEIPI 194

Query: 73  IKLFDCWSYPNADVQLLGEGIVSWTTTCYFVYTPFLANLARWVKA 117
           ++ F  W YP A++++ G+G+V+WTTTCYFVYTPFL NLARW++ 
Sbjct: 195 MQFFHLWYYPEANIEIFGQGLVTWTTTCYFVYTPFLINLARWLRT 239
  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,534,134
Number of extensions: 93676
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)