BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0249900 Os01g0249900|AK072886
         (312 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04930.1  | chr3:1363029-1364399 FORWARD LENGTH=457             57   2e-08
AT5G28040.1  | chr5:10037654-10038937 REVERSE LENGTH=428           56   2e-08

>AT3G04930.1 | chr3:1363029-1364399 FORWARD LENGTH=457
          Length = 456

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 260 GLGFGIAGLNPGVPGADRWRQHQILELEVYLKRIELVREQVTAALDELRS 309
             GFG+ G        +RWR+ QILELEVY +R+ELV+EQ+   L+EL++
Sbjct: 402 NFGFGVEGGGNKAVADERWRKQQILELEVYSRRLELVQEQIRTTLNELKT 451



>AT5G28040.1 | chr5:10037654-10038937 REVERSE LENGTH=428
          Length = 427

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 5/50 (10%)

Query: 260 GLGFGIAGLNPGVPGADRWRQHQILELEVYLKRIELVREQVTAALDELRS 309
            LGFG  G+     G +RWR+ QILELEVY +R+ELV+EQ+ A ++EL++
Sbjct: 378 NLGFGGKGV-----GDERWRRQQILELEVYSRRLELVQEQIRATVNELKT 422



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,427,730
Number of extensions: 121041
Number of successful extensions: 293
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 2
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)