BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0242300 Os01g0242300|AK070082
         (170 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G28510.1  | chr1:10024036-10025939 FORWARD LENGTH=172          193   3e-50
AT3G58150.1  | chr3:21532947-21534072 REVERSE LENGTH=195          157   2e-39

>AT1G28510.1 | chr1:10024036-10025939 FORWARD LENGTH=172
          Length = 171

 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 118/164 (71%)

Query: 1   MSLPVAKLGTLALRTLSKPIASRLKNQAAVHPKFRNFIICIAQINHRVTTRIQRRIYGHA 60
           M LP+ KLGTLA++T+SKP+AS+LK+QA VHPKFR  II  AQ NHR+TT++QRRIYGHA
Sbjct: 1   MVLPLMKLGTLAVKTISKPLASQLKHQAKVHPKFRQSIINFAQRNHRITTQMQRRIYGHA 60

Query: 61  TDVEITPLNEEKAVQAATDLIGEGFIFSVAVAALIFEVQRNARSEARKEEAXXXXXXXXX 120
           TDVEI PL+EEKAVQAA DLIGE F+F V  A ++FEVQR++RSEARKEEA         
Sbjct: 61  TDVEIRPLDEEKAVQAAVDLIGEIFLFGVGGAVVVFEVQRSSRSEARKEEARKQELEELR 120

Query: 121 XXXXXXXXDLEDLKLRLAEIEHLAKGRGLSGILNFKGVHGAESS 164
                    + DLK +L E+E LAK RGLSGI   K   G  +S
Sbjct: 121 IKDEELEKQVADLKSKLEELEQLAKARGLSGIFQLKPQPGTTAS 164



>AT3G58150.1 | chr3:21532947-21534072 REVERSE LENGTH=195
          Length = 194

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 109/178 (61%), Gaps = 17/178 (9%)

Query: 1   MSLPVAKLGTLALRTLSKPIASRLKNQAAVHPKFRNFIICIAQINHRVTTRIQRRIYGHA 60
           M LP+ KLGTLALRT+ KPIA++LK +A V+PKFR FII IAQ NHR TT++QRR  G  
Sbjct: 12  MVLPLLKLGTLALRTICKPIANQLKKEAGVNPKFRQFIINIAQANHRFTTKLQRRASGRI 71

Query: 61  TDVEITPLNEEKAVQAATDLIGEGFIFSVAVAALIFEVQRNARSEARKEEAXXXXXXXXX 120
           TD  I PLNEE+AVQAA DL+GE F F+VA AAL++EVQRNAR EA+KEE          
Sbjct: 72  TDAVIRPLNEERAVQAAADLLGELFAFTVAGAALVYEVQRNARGEAKKEEKRQQELAEFR 131

Query: 121 XXXXXXXXDLEDLKLRLAEI-----------------EHLAKGRGLSGILNFKGVHGA 161
                   ++E++K R   +                 E ++K RGL+ + N+     A
Sbjct: 132 RKHEKMENEIEEMKQRCCLLHEELSKPINEQPSKPLNEEVSKPRGLAWLYNYMCYQNA 189



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,715,634
Number of extensions: 82420
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)