BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0237000 Os01g0237000|AK062426
         (162 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03700.1  | chr1:921038-921844 FORWARD LENGTH=165               64   4e-11
AT4G03540.1  | chr4:1570042-1571483 FORWARD LENGTH=165             53   8e-08

>AT1G03700.1 | chr1:921038-921844 FORWARD LENGTH=165
          Length = 164

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 38/49 (77%)

Query: 108 ELGKNGNSHAGWIAICVQVPLFCDRVRSALVAGSATIVLYYLMLMYSIY 156
           ++GK GN++AGW+ IC QVP FCD++  AL+AG   +VLY  +L++SI+
Sbjct: 105 QVGKRGNANAGWLPICGQVPRFCDQITGALIAGLVALVLYVFLLIFSIH 153



>AT4G03540.1 | chr4:1570042-1571483 FORWARD LENGTH=165
          Length = 164

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query: 108 ELGKNGNSHAGWIAICVQVPLFCDRVRSALVAG 140
           ++GK GN++AGW+ IC QVP FCD++  AL+AG
Sbjct: 105 QVGKKGNANAGWLPICGQVPKFCDQITGALIAG 137



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,671,101
Number of extensions: 34678
Number of successful extensions: 79
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 71
Effective length of database: 8,611,713
Effective search space: 611431623
Effective search space used: 611431623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)