BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0235900 Os01g0235900|Os01g0235900
(391 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G64500.1 | chr1:23953270-23954376 FORWARD LENGTH=369 167 1e-41
AT4G10630.1 | chr4:6566625-6567629 REVERSE LENGTH=335 109 3e-24
AT3G57070.1 | chr3:21124174-21125427 FORWARD LENGTH=418 107 1e-23
AT5G03870.1 | chr5:1035813-1036967 REVERSE LENGTH=385 107 1e-23
AT5G06470.1 | chr5:1974659-1975378 REVERSE LENGTH=240 104 8e-23
AT5G39865.1 | chr5:15965560-15966732 REVERSE LENGTH=391 103 2e-22
AT5G13810.1 | chr5:4455769-4456593 FORWARD LENGTH=275 102 3e-22
AT5G01420.1 | chr5:174886-176091 REVERSE LENGTH=402 98 6e-21
AT3G28850.1 | chr3:10848669-10849955 FORWARD LENGTH=429 97 2e-20
AT1G32760.1 | chr1:11858251-11859195 FORWARD LENGTH=315 92 3e-19
AT2G41330.1 | chr2:17227067-17228275 FORWARD LENGTH=403 91 1e-18
AT5G58530.1 | chr5:23660428-23661249 FORWARD LENGTH=274 88 6e-18
AT3G11773.2 | chr3:3722989-3723659 REVERSE LENGTH=201 86 4e-17
>AT1G64500.1 | chr1:23953270-23954376 FORWARD LENGTH=369
Length = 368
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 126/220 (57%), Gaps = 22/220 (10%)
Query: 175 TGRRVVKDNPFLMRDRENKGNDGGXXXXXXXXXXXDPFEGYPERRPPGASGGGVVLYTTT 234
+G R VK+N F+ RDRE + +G DP +PE+ PPG G G+++YTT+
Sbjct: 166 SGPRSVKENIFVKRDRERREKEGNKKPVMNW----DPLREFPEKCPPGG-GEGLIVYTTS 220
Query: 235 LRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEYLRELRGLAG--AGD 292
L+GVRRT+EDC R R DERDVSL L EL+ L A
Sbjct: 221 LQGVRRTYEDCMRVR----------AIMEQQGVVVDERDVSLDAGVLSELKELLQDEASV 270
Query: 293 APPRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKDGR-GCEGCGGARFVP 351
APPR+FV GRYLGGA + E+GKL ++RWAR ++GR CEGCGGAR++P
Sbjct: 271 APPRVFVKGRYLGGAAEVTAMNENGKLGRVLRWARVER---VGEEGRLTCEGCGGARWLP 327
Query: 352 CWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPICH 391
C+ECGGSCKV ERC KCNENGL+ CP+C
Sbjct: 328 CFECGGSCKVAAVGAAKGER-WERCVKCNENGLIRCPVCF 366
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 26/108 (24%)
Query: 1 MGCAGSKDV---TVADVYRPPPTSVSLFDISAIEEPWLIATGKKNXXXXXXXXXXXXXXX 57
MGC SK VADVY+PPP+S ++FD++AI+EPWL + +
Sbjct: 1 MGCTSSKQAKANVVADVYKPPPSSFAVFDVNAIQEPWLKFEHEDDE-------------- 46
Query: 58 XXXXGKKPTTTVM---PLPLLDKLDGYDLAPASWSEVSKALE-DIKPA 101
K P +TV D D D AP +W EVSK+LE +KPA
Sbjct: 47 -----KPPRSTVFDRLDEDDDDDDDDGDDAPKTWEEVSKSLETKLKPA 89
>AT4G10630.1 | chr4:6566625-6567629 REVERSE LENGTH=335
Length = 334
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 89/178 (50%), Gaps = 22/178 (12%)
Query: 220 PPGASGGGVVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGE 279
PPG VV+YTT+LRGVR+TFE C R ERDVS+
Sbjct: 171 PPGGENR-VVMYTTSLRGVRQTFEACNAVRAAVESFGVVVC----------ERDVSMDRR 219
Query: 280 YLRELRGLA-------GAGDAPPRLFVMGRYLGGADACAELAESGKLREMMRWARARGEA 332
+ EL L G PPR+FV GRY+GG + L E G E++ R +A
Sbjct: 220 FREELVSLMAKRVGDEGVAALPPRVFVKGRYIGGGEEVLRLVEEGSFGELIS-GIPRKKA 278
Query: 333 CAAKDGRGCEGCGGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPIC 390
+ G C+GCGG F+PC+ C GSCK+V V RC +CNENGL+ CPIC
Sbjct: 279 GGCESG-ACDGCGGLFFLPCFRCNGSCKMVKGWGSASV--VVRCNECNENGLVPCPIC 333
>AT3G57070.1 | chr3:21124174-21125427 FORWARD LENGTH=418
Length = 417
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 23/166 (13%)
Query: 228 VVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEYLRELRGL 287
+VLY TTLRG+R+T+EDC R DERD+S+ +Y +EL+ +
Sbjct: 270 IVLYFTTLRGIRKTYEDCCCVR----------AILRGVQVSVDERDISMDSKYRKELQSV 319
Query: 288 AGAGDAP---PRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKDGRGCEGC 344
GA + P P++F+ G ++GG + +L + G+L EM++ + A + C C
Sbjct: 320 LGAAEKPVCLPQVFIRGTHIGGVEEIMQLNDGGELAEMLK------DFPACERLGTCRSC 373
Query: 345 GGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPIC 390
G ARFVPC C GS KV +RC KCNENGL+ C +C
Sbjct: 374 GDARFVPCTNCDGSTKVFEEQDER----FKRCPKCNENGLVRCRVC 415
>AT5G03870.1 | chr5:1035813-1036967 REVERSE LENGTH=385
Length = 384
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 90/180 (50%), Gaps = 21/180 (11%)
Query: 212 FEGYPERRPPGASGGGVVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDE 271
E +PE+ PPG VV+Y TTLRG+R+TFEDC R E
Sbjct: 224 LEKFPEKCPPGGEHS-VVIYITTLRGIRKTFEDCNVVR----------SILDSHEVRFSE 272
Query: 272 RDVSLHGEYLRELRGLAGAGDAP-PRLFVMGRYLGGADACAELAESGKLREMMRWARARG 330
RDVS+H + E+RG+ G P +FV GR +G + L E GKL ++ G
Sbjct: 273 RDVSMHSVFKEEIRGIMGTKHVKIPAVFVKGRMVGSVEEVMRLEEEGKLGILLE-----G 327
Query: 331 EACAAKDGRGCEGCGGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPIC 390
A G C GCGG RF+ C C GSCKV + +C KCNENGL+LCPIC
Sbjct: 328 IPAARLGGSCCRGCGGMRFMMCVVCNGSCKV----REEEKKSMVKCLKCNENGLVLCPIC 383
>AT5G06470.1 | chr5:1974659-1975378 REVERSE LENGTH=240
Length = 239
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 87/179 (48%), Gaps = 22/179 (12%)
Query: 215 YPERRPPGASGGGVVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDV 274
+ E PPG VV YTT LR VR+TFE C R R ERDV
Sbjct: 79 FKENCPPGGEDS-VVFYTTGLRSVRKTFEACRRVR----------FLLENHQVMYRERDV 127
Query: 275 SLHGEYLRELRGLAGAGDAPPRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACA 334
S+ E+ E+ L G PRLF+ GRY+GGA+ L E+GKL+++++
Sbjct: 128 SMDSEFREEMWRLLGGKVTSPRLFIRGRYIGGAEEVVALNENGKLKKLLQG--------I 179
Query: 335 AKDGRGCEGCGGARFVPCWECGGSCKVVXXXXXXXXXDVE---RCAKCNENGLMLCPIC 390
++ CE C RF+ C C GS +++ + RC +CNENGL+ CP+C
Sbjct: 180 SQVDSPCESCENERFLICSSCNGSTRLLAEHHDEESSNDNMWTRCRECNENGLVKCPLC 238
>AT5G39865.1 | chr5:15965560-15966732 REVERSE LENGTH=391
Length = 390
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 86/173 (49%), Gaps = 21/173 (12%)
Query: 228 VVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEYLRELRGL 287
VVLY T+LRG+R+T+EDC R DERDVS+H + EL+ L
Sbjct: 227 VVLYFTSLRGIRKTYEDCCNIR----------IILKSLGIRIDERDVSMHSGFKDELKKL 276
Query: 288 A------GAGDAPPRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKDGRGC 341
G G PR+F+ +YLGG + +L E+G+L ++++ E + G C
Sbjct: 277 LEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMV-EDGSPGFGNEC 335
Query: 342 EGCGGARFVPCWECGGSCKVVXXXXXXXXXDVE----RCAKCNENGLMLCPIC 390
E CG RFVPC C GSCK+ E RC CNENGL+ C +C
Sbjct: 336 EACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVC 388
>AT5G13810.1 | chr5:4455769-4456593 FORWARD LENGTH=275
Length = 274
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 21/164 (12%)
Query: 228 VVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEYLRELRGL 287
+V+Y T+LRG+RRT+EDC R DERDVS+ Y +EL+
Sbjct: 129 IVVYFTSLRGIRRTYEDCYAVR----------MIFRGFRVWIDERDVSMDIAYRKELQIA 178
Query: 288 AGAGDAP-PRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKDGRGCEGCGG 346
G P++F+MG+Y+GGAD L E G+L ++++ R + G C CG
Sbjct: 179 MGEKSVSLPQVFIMGKYVGGADVIKSLFEIGELAKILKEFPMR------QPGFVCHCCGD 232
Query: 347 ARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPIC 390
RFVPC C GS K+ V+RC +CNENGL+ CP C
Sbjct: 233 IRFVPCSNCSGSKKLFDEDEDR----VKRCPECNENGLIRCPDC 272
>AT5G01420.1 | chr5:174886-176091 REVERSE LENGTH=402
Length = 401
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 85/183 (46%), Gaps = 25/183 (13%)
Query: 210 DPFEGYPERRPPGASGGGVVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXX 269
DP + ER PPG VV YTTTLRG+R+TF+DC R
Sbjct: 241 DPLLEFEERCPPGGEES-VVFYTTTLRGIRKTFDDCNMIRFLLDSFKVKYY--------- 290
Query: 270 DERDVSLHGEYLRELRGLAGAGDA--PPRLFVMGRYLGGADACAELAESGKLREMMRWAR 327
ERDVS+H EY ELR ++ A PP LFV GR +GGA L E GK + +
Sbjct: 291 -ERDVSMHREYREELRRISAAETEVLPPVLFVKGRCIGGAQRVLGLHEQGKFKILFEGIP 349
Query: 328 ARGEACAAKDGRGCEGCGGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLC 387
G+ C C G RF+ C C GS +++ +C CNENGL++C
Sbjct: 350 ITGD-------ERCRRCDGFRFLMCDGCRGSRRIISGDGSRI-----QCLICNENGLIVC 397
Query: 388 PIC 390
C
Sbjct: 398 VGC 400
>AT3G28850.1 | chr3:10848669-10849955 FORWARD LENGTH=429
Length = 428
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 85/185 (45%), Gaps = 33/185 (17%)
Query: 228 VVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEYLRELRGL 287
V+LY T+LRG+R+T+E+ R DERDVS+H + EL+ L
Sbjct: 253 VILYFTSLRGIRKTYEESCDVR----------VILKSLGIRVDERDVSMHSGFKDELKEL 302
Query: 288 ------AGAGDAPPRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKDGRGC 341
G G PR+F+ +Y+GGA+ +L E GKL +++ R E +G C
Sbjct: 303 LGEKFNKGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCE-RVEENQNGNGLEC 361
Query: 342 EGCGGARFVPCWECGGSCKV----------------VXXXXXXXXXDVERCAKCNENGLM 385
E CG RFVPC C GSCKV + C CNENGL+
Sbjct: 362 EACGDVRFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLI 421
Query: 386 LCPIC 390
CP+C
Sbjct: 422 RCPVC 426
>AT1G32760.1 | chr1:11858251-11859195 FORWARD LENGTH=315
Length = 314
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 228 VVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEYLRELRGL 287
VV+YTT+LRGVRRTFE C R ERDVS+ + EL L
Sbjct: 163 VVIYTTSLRGVRRTFEACNAVRAAIESFGVVVC----------ERDVSMDRGFREELSNL 212
Query: 288 ----AGAGDAPPRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKDGRGCEG 343
+ A PPR+FV G+Y+GGA+ L E G L E+++ + + + G GC G
Sbjct: 213 MAVESTAAVLPPRVFVKGKYIGGAEEVMRLVEEGLLGELLKEIPRKKD----RCGGGCGG 268
Query: 344 CGGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPICH 391
CGG F+PC C GSCKVV V +C +CNENGL+ CPIC
Sbjct: 269 CGGLAFLPCSGCNGSCKVVEGWGNDAV--VVKCKECNENGLVRCPICS 314
>AT2G41330.1 | chr2:17227067-17228275 FORWARD LENGTH=403
Length = 402
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 24/166 (14%)
Query: 228 VVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEYLRELRGL 287
+V+Y T+LRG+R+T+EDC R +ERD+S+ +Y +EL+
Sbjct: 256 IVVYFTSLRGIRKTYEDCCCVR----------AILRGFQVAVEERDISMDSKYRKELQNA 305
Query: 288 AGAGDAP---PRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKDGRGCEGC 344
G + P P++F+ G +GG + L + G+L EM++ + A + C+ C
Sbjct: 306 LGE-EKPVCLPQVFIRGVRIGGIEEIKILNDGGELAEMLK------DFPACESIGACDSC 358
Query: 345 GGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPIC 390
G ARFVPC CGGS KV +RC CNENGL+ C C
Sbjct: 359 GDARFVPCTNCGGSTKVFEEQEDG----FKRCNGCNENGLVRCNKC 400
>AT5G58530.1 | chr5:23660428-23661249 FORWARD LENGTH=274
Length = 273
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 84/180 (46%), Gaps = 33/180 (18%)
Query: 221 PGASGGGVVLYTTTLRGVRRTFEDCERARKXXXXXXXXXXXXXXXXXXXDERDVSLHGEY 280
PGA +V+Y T+LR VR TFE C+ DERD+S+ +
Sbjct: 109 PGAEKS-IVVYFTSLRVVRPTFEACKSV----------TSILHSFPVRIDERDLSMDASF 157
Query: 281 LRELRGLAGAGDAP----------PRLFVMGRYLGGADACAELAESGKLREMMRWARARG 330
EL+ + G PR+F+ GRY+GGA+ +L E G+L+++++
Sbjct: 158 STELQRIFGKDQNQNQNQAKTPKLPRVFIGGRYIGGAEEVKQLHEIGELKKLVQ------ 211
Query: 331 EACAAKDGRGCEGCGGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPIC 390
E + G CE CGG RFVPC +C GS KV C CNENGL+ C C
Sbjct: 212 ELPKIEPG-VCEMCGGHRFVPCKDCHGSHKV-----HTEKLGFRTCLTCNENGLVRCSSC 265
>AT3G11773.2 | chr3:3722989-3723659 REVERSE LENGTH=201
Length = 200
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 12/120 (10%)
Query: 271 ERDVSLHGEYLRELRGLAGAGDAPPRLFVMGRYLGGADACAELAESGKLREMMRWARARG 330
ERDVS+ EY E+ L G PPRLF+ +Y+GGAD L E+ KL++++
Sbjct: 92 ERDVSMDCEYKEEMWRLLGEQVTPPRLFIKCKYIGGADEVVSLNENEKLKKLL------- 144
Query: 331 EACAAKDGRGCEGCGGARFVPCWECGGSCKVVXXXXXXXXXDVERCAKCNENGLMLCPIC 390
E ++ R CE C RF+ C +C G +VV +RC +CNENGL+ C +C
Sbjct: 145 EVFSSAKSRQCEMCENERFLICSKCNGRSRVVAEHETW-----KRCIECNENGLVKCALC 199
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,116,873
Number of extensions: 248418
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 14
Length of query: 391
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,337,553
Effective search space: 2417890370
Effective search space used: 2417890370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)