BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0235300 Os01g0235300|AK059862
(214 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17100.1 | chr1:5844766-5845539 FORWARD LENGTH=233 150 7e-37
AT1G78450.1 | chr1:29517147-29517910 REVERSE LENGTH=226 112 1e-25
AT1G78460.1 | chr1:29518547-29519296 REVERSE LENGTH=220 88 3e-18
AT3G10130.1 | chr3:3131122-3133158 REVERSE LENGTH=310 51 4e-07
AT5G20140.2 | chr5:6799066-6800892 REVERSE LENGTH=396 51 5e-07
>AT1G17100.1 | chr1:5844766-5845539 FORWARD LENGTH=233
Length = 232
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 13/189 (6%)
Query: 27 ETPQYTTVHAESDFEVRRYRDTVWMSA-PSDDISFHVATKLGFHRLFQYLMGANLNSSRI 85
E P Y VH+ + +E+RRY +TVW+S P DIS AT+ F +LF Y+ G N +I
Sbjct: 46 ECPSYELVHSGNGYEIRRYNNTVWVSTEPIPDISLVDATRTAFFQLFAYIQGKNEYHQKI 105
Query: 86 RMTTPILTSIVPGAGPLHSSAYFVRLYLPAKFQASPPVPLPELNLHPDRWPSHCIAVRSF 145
MT P+++ + P GP S++ V Y+P K Q P P P NLH +W S +AVR F
Sbjct: 106 EMTAPVISQVSPSDGPFCESSFTVSFYVPKKNQ---PDPAPSENLHIQKWNSRYVAVRQF 162
Query: 146 SGYARDNNVVEEAEKLALSLSRSPWANST-------NYPSKSAYSIAQYNNPFRIIGRLN 198
SG+ D+++ E+A L SL + WAN+ S SAY++AQYN+PF GR+N
Sbjct: 163 SGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYTVAQYNSPFEFSGRVN 222
Query: 199 EVW--FDVD 205
E+W F++D
Sbjct: 223 EIWLPFELD 231
>AT1G78450.1 | chr1:29517147-29517910 REVERSE LENGTH=226
Length = 225
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 16/184 (8%)
Query: 27 ETPQYTTVHAESDFEVRRYRDTVWMSA-PSDDISFHVATKLGFHRLFQYLMGANLNSSRI 85
E P Y VHA + +E+ RY TVW+S P DIS + A+ G+++L Y+ G N RI
Sbjct: 35 ECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRI 94
Query: 86 RMTTPILTSIVPGAGPLHSSAYFVRLYLPAKFQASPPVPLPELNLHPDRWPSHCIAVRSF 145
+ P +T + + S + V ++P FQ PP P NLH RW S +AV+
Sbjct: 95 EIALPYITQV-----SQNLSTFIVSFFVPKAFQPDPP---PGNNLHVQRWDSRYVAVKQI 146
Query: 146 SGYARDNNVVEEAEKLALSLSRSPWANSTNYPSKS-------AYSIAQYNNPFRIIGRLN 198
SGY D+ + ++ +L SL + WA + ++ AY++AQ++ PF+ R+N
Sbjct: 147 SGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVN 206
Query: 199 EVWF 202
E+WF
Sbjct: 207 EIWF 210
>AT1G78460.1 | chr1:29518547-29519296 REVERSE LENGTH=220
Length = 219
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 27 ETPQYTTVHAESDFEVRRYRDTVWMS-APSDDISFHVATKLGFHRLFQYLMGANLNSSRI 85
E P Y V A FE+R Y +W+S +P +S ATK GF RL +Y+ G N ++ ++
Sbjct: 44 ECPTYKLVEAGYGFEIRMYDAALWISTSPIPSLSMTQATKTGFRRLNRYIEGDNKSNVKM 103
Query: 86 RMTTPILTSIVPGAGPLHSSAYFVRLYLPAKFQASPPVPLPELNLHPDRWPSHCIAVRSF 145
MT P++ PG S Y V LYLP K Q +PP +LH +AVR
Sbjct: 104 NMTAPVIAQATPG-----RSVYTVSLYLPKKNQQNPP---QADDLHVRSTKPTYVAVRQI 155
Query: 146 SGYARDNNVVEEAEKLALSLSRSPWANSTNYPSKS--AYSIAQYNNPFRIIGR-LNEV 200
GY +N +EA L SL S W AY +A YN P R +NE+
Sbjct: 156 GGYVSNNVAKDEAAALMESLRDSNWILPIEKSKGKLPAYFLAVYNPPSHTTARVINEI 213
>AT3G10130.1 | chr3:3131122-3133158 REVERSE LENGTH=310
Length = 309
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 67 GFHRLFQYLMGANLNSSRIRMTTPILTSIVPGAG-------PLHSSA------YFVRLYL 113
F+ L +YL G N ++ MTTP++T V G P+ +S + + +
Sbjct: 157 SFNVLAEYLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVM 216
Query: 114 PAKFQASPPVPL-PELNLHPDRWPSHCIAVRSFSGYARDNNVVEEAEKLALSLSRSPWAN 172
P+K+ ++ P+P P + + + P +AV +FSGY D + +L +L N
Sbjct: 217 PSKYGSNLPLPKDPSVKIQ--QVPRKIVAVVAFSGYVTDEEIERRERELRRALQ-----N 269
Query: 173 STNYPSKS--AYSIAQYNNPFRI-IGRLNEVWFDVDCK 207
+ + ++ +AQYN PF + R NEV +V+ K
Sbjct: 270 DKKFRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVENK 307
>AT5G20140.2 | chr5:6799066-6800892 REVERSE LENGTH=396
Length = 395
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 27 ETPQYTTVHAESDFEVRRYRDTVWMSAPSDDISFHVATKLGFHRLFQYLMGANLNSSRIR 86
ETP+Y + +++EVR Y + + D +S GF+ + Y+ G N +I
Sbjct: 206 ETPKYQILKRTANYEVRNYEPFIVVETIGDKLS----GSSGFNNVAGYIFGKNSTMEKIP 261
Query: 87 MTTPILTSIVPGAGPLHSSAYFVRLYLPAKFQASPPVPLP-ELNLHPDRWPSHCIAVRSF 145
MTTP+ T SS V++ +P+ S +P+P E ++ + A F
Sbjct: 262 MTTPVFTQTTDTQ---LSSDVSVQIVIPSGKDLS-SLPMPNEEKVNLKKLEGGFAAAVKF 317
Query: 146 SGYARDNNVVEEAEKLALSLSRSPWANSTNYPSKSAYSIAQYNNPFR 192
SG ++ V + +L SLS+ +K +A+YN+P R
Sbjct: 318 SGKPTEDVVQAKENELRSSLSKD------GLRAKKGCMLARYNDPGR 358
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,325,696
Number of extensions: 174766
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 5
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)