BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0229500 Os01g0229500|AK108111
(167 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16175.1 | chr3:5480497-5481208 FORWARD LENGTH=158 76 9e-15
AT2G29590.1 | chr2:12654602-12655432 REVERSE LENGTH=159 60 6e-10
AT1G04290.1 | chr1:1147721-1148352 REVERSE LENGTH=156 55 2e-08
>AT3G16175.1 | chr3:5480497-5481208 FORWARD LENGTH=158
Length = 157
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 7/148 (4%)
Query: 22 WLEEAGVAFDGSDRRAFNALPLAGARVSLAEAGRAV--CSLRVTAELTDAEGNWHPGXXX 79
+LEE G+ + F L L G + L G+ + C L VT + +G+W+ G
Sbjct: 12 YLEEIA---KGNGQTEFEILILKG--LELIHVGKGILRCKLLVTDHVVGEDGSWNAGVIT 66
Query: 80 XXXXXXXXXXXMSVEGIIKVSVHYDISYFSPAKLHEEVELDGRVVEQKGKMTAVTVEIRK 139
S G + +SV + S++S AK+HE VE++ RV G + + +EIR+
Sbjct: 67 AVMDSIGASAVYSSGGGLHISVDLNSSFYSTAKIHETVEIEARVNGSNGGLKSAVIEIRR 126
Query: 140 KDSGELVAIGRQWMSTTRPKKDQASSKL 167
+ SGE++A GR WM+ K Q S L
Sbjct: 127 ETSGEIIATGRLWMAPLSVKAIQNVSTL 154
>AT2G29590.1 | chr2:12654602-12655432 REVERSE LENGTH=159
Length = 158
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 30 FDGSDRRAFNALPLAGARVSLAEAGRAVCSLRVTAELTDAEGNWHPGXXXXXXXXXXXXX 89
F G + + L G RV+ E G CS +V LTD + N G
Sbjct: 27 FLGEGKSFYENFSLRGIRVNRVEPGFISCSFKVPLRLTDRDKNLANGAIANLVDEVGGAL 86
Query: 90 XMSVEGI-IKVSVHYDISYFSPAKLHEEVELDGRVVEQKGKMTAVTVEIRKKDSGELVAI 148
EG+ + VSV I++ S AKL EE+E+ R++ ++G V +R K +GE++A
Sbjct: 87 VHG-EGLPMSVSVDMSIAFLSKAKLGEELEITSRLLGERGGYKGTIVVVRNKMTGEIIAE 145
Query: 149 GRQWM 153
GR M
Sbjct: 146 GRHSM 150
>AT1G04290.1 | chr1:1147721-1148352 REVERSE LENGTH=156
Length = 155
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 45 GARVSLAEAGRAVCSLRVTAELTDAEGNWHPGXXXXXXXXXXXXXXMSVEGIIK--VSVH 102
G +V L E GR VCS+++ L +A G + G + G VSV
Sbjct: 38 GLKVDLIEPGRIVCSMKIPPHLLNA-GKFLHGGATATLVDLIGSAVIYTAGASHSGVSVE 96
Query: 103 YDISYFSPAKLHEEVELDGRVVEQKGKMTAVTVEIRKKDSGELVAIGRQ 151
++SY A L EE+E++ + + + V+VE+RKK +G+++A GR
Sbjct: 97 INVSYLDAAFLDEEIEIESKALRVGKAVAVVSVELRKKTTGKIIAQGRH 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,678,869
Number of extensions: 81648
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 4
Length of query: 167
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 76
Effective length of database: 8,611,713
Effective search space: 654490188
Effective search space used: 654490188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)