BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0228800 Os01g0228800|AK065657
         (687 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42710.1  | chr5:17125578-17128696 FORWARD LENGTH=808           58   2e-08

>AT5G42710.1 | chr5:17125578-17128696 FORWARD LENGTH=808
          Length = 807

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 504 STHLVSKNEVEIKDEMSLLLLSDQPFLTRAAELIGIGEPGHLINRYKGIRKAQMGNHELF 563
           +T  +S+NE+ +K     + +  Q FL  A     +  P ++ +           +  L 
Sbjct: 630 TTETLSENEINLKK----IFVKSQLFLDTAKAHFKLNIPQNVFHDTTSGSYYYQEDKNLT 685

Query: 564 VDTATEQLERKHRQRNSLCYTGIWSQKCRTAPYFSLEALLTDIRDATRKLSIYTED-DDG 622
           ++ A E ++RK R+   L           ++   SL+ L+  I     KL  Y  D   G
Sbjct: 686 LECAFELMKRK-RRFQELSVHPFVKVPISSSKINSLDHLIRQISKELEKLRAYGRDCHIG 744

Query: 623 CTTKDTLYMKLEKDLRCTDASINSVWDMGWEDWI--FMEETQCFIRDVGESILSGLIEEA 680
              +D +   LE+D+   D  +NS+WDMGW D +  F+E+    +RD+   + SGL+EE 
Sbjct: 745 SHVEDYV---LERDVHYKDPYLNSMWDMGWNDSMLAFIEKDDV-MRDIEREVFSGLLEEI 800

Query: 681 ALDM 684
             D+
Sbjct: 801 TRDL 804



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,895,326
Number of extensions: 561739
Number of successful extensions: 1581
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1582
Number of HSP's successfully gapped: 2
Length of query: 687
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 582
Effective length of database: 8,227,889
Effective search space: 4788631398
Effective search space used: 4788631398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)