BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0226500 Os01g0226500|AK066242
         (435 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46200.1  | chr2:18974864-18976646 REVERSE LENGTH=383          238   6e-63

>AT2G46200.1 | chr2:18974864-18976646 REVERSE LENGTH=383
          Length = 382

 Score =  238 bits (606), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 195/391 (49%), Gaps = 48/391 (12%)

Query: 39  FWQRDNVREHVGRLQETIELATAVINELEE---IAQARNSVDASTQGPDSSSAKLSSEPD 95
           FW   N+ + + +LQ+T+ LA ++  ELE    I  A+ SV+ + Q  DS          
Sbjct: 29  FWNTKNITDQLKQLQDTLNLAKSMEKELEALKMIKDAKGSVENAVQ--DSG--------- 77

Query: 96  GSSADRPRHFVELARAMKISQDTHESLATDAANYLCSQIQNLLAPIYPAVNQGGPWEERY 155
                     VE   A K+     E L+ DAAN L S ++  L P    V++  PWEE+ 
Sbjct: 78  ----------VEYLEARKMDLGQQEMLSVDAANSLMSTLRAQLEPFRFVVDENSPWEEKS 127

Query: 156 AMIRLAQKLQXXXXXXXXXXXXXXHVAELFQKEHADYDRIDQEADEWRARQIAKDMAQRK 215
           A +RL  K++                AE+  KE   +++ D+EADEWR +++AKDMA RK
Sbjct: 128 AAVRLTCKMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADEWREKEMAKDMANRK 187

Query: 216 VENMKQIAKKKANXXXXXXXXXXXXXXMVEKLQELRSMRVQKMKKQGHFLPEEDDKYLXX 275
           V+ MK I K KA               +VE++QELRS+R++K+KKQGHFLPEEDDK+   
Sbjct: 188 VDEMKAIEKIKAKRERKRLEPELELALIVEEMQELRSLRIEKLKKQGHFLPEEDDKFFES 247

Query: 276 XXXXXXXXXXXXXXXXXXXXXXXXILTAEESRKAVQCSNSREDDSDQAKSAPTLEQNQRD 335
                                   I + E +        + + D D   +A + E+  + 
Sbjct: 248 VRAAVEQEENQAQSLINTETEEHVIASEENTTLTTSNKTNNDTDKDSNTNAASCERTMKA 307

Query: 336 PGISGRNHHASQKTEHELHKDDSKGHGHYDSVSSLPFEFYHYYHGSSYDMGTLIEVRRMW 395
           P                            D++S+LP E YHYY+GS+ DMG LIE+RR W
Sbjct: 308 PD------------------------NGCDNISNLPVEVYHYYYGSNIDMGRLIEIRREW 343

Query: 396 DSFIRAGGSRIPGHWVQPPPPADEVWASYLV 426
           D+++ AGGSRIPGHWVQP PPA+E+WAS LV
Sbjct: 344 DAYLSAGGSRIPGHWVQPSPPANEIWASCLV 374



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.127    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,666,522
Number of extensions: 278342
Number of successful extensions: 734
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)