BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0226200 Os01g0226200|Os01g0226200
         (410 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64080.1  | chr1:23785230-23786557 REVERSE LENGTH=412           89   6e-18
AT5G52870.1  | chr5:21428191-21429367 REVERSE LENGTH=327           50   2e-06

>AT1G64080.1 | chr1:23785230-23786557 REVERSE LENGTH=412
          Length = 411

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 104/228 (45%), Gaps = 40/228 (17%)

Query: 168 IKFRVDDAPFVSLFTRDNSSRTSDXXXXXXXXRPAVQALQTPEAAAITAEERRFAKEMLL 227
           +  +V++ P +SLF+R+NSS+ S           +    Q    + + ++E+RF   M+ 
Sbjct: 212 VNLKVEEVPIISLFSRENSSKNSSSSSSSSSSSSSSLKKQNGNESVV-SDEKRFV--MMQ 268

Query: 228 KYLNKIKPLYVKVSRRYGERLR----FASASEGEETDLEPDXXXXXXXXXXXXXXXXXXX 283
           KYL K+KPLY++VSRRYGE+LR      + S    T  + D                   
Sbjct: 269 KYLKKVKPLYIRVSRRYGEKLRHSGQLTAPSSARSTAEKADSPVATKTNNKP-------- 320

Query: 284 XXXXXXXXXXXXXXXXXCGVRAPRASVPAGLKQVCKRLGKSRXXXXXXXXXXXXXXXXXX 343
                                    ++PAGLK V K LGKSR                  
Sbjct: 321 ---------------------GNNINIPAGLKVVRKHLGKSRSSSSTATTPSSTTATVTT 359

Query: 344 XXXGQQPQRRDDSLLQLQDGIQSAIAHCKRSFNASKGSESPLL-RSMS 390
                + +RRDDSLLQ QD IQSAI HCKRSFN+S+  +  +L RS+S
Sbjct: 360 Q---SESRRRDDSLLQQQDSIQSAILHCKRSFNSSRDKDPSVLPRSVS 404



>AT5G52870.1 | chr5:21428191-21429367 REVERSE LENGTH=327
          Length = 326

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 15/71 (21%)

Query: 307 RASVPAGLKQVCKRLGKSRXXXXXXXXXXXXXXXXXXXXXGQQPQRRDDSLLQLQ-DGIQ 365
           R+++P+G++ V ++LGKSR                     G  P  R D  LQ+Q DGIQ
Sbjct: 210 RSNIPSGMRSVRRQLGKSRSASAAIG--------------GMSPANRIDESLQVQQDGIQ 255

Query: 366 SAIAHCKRSFN 376
           SAI HCK+SF+
Sbjct: 256 SAILHCKKSFH 266



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,064,065
Number of extensions: 137174
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,337,553
Effective search space: 2576303877
Effective search space used: 2576303877
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)