BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0222500 Os01g0222500|AK072778
(231 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11150.1 | chr4:6800091-6801696 FORWARD LENGTH=231 275 2e-74
AT1G64200.1 | chr1:23828537-23830002 REVERSE LENGTH=238 270 6e-73
AT3G08560.1 | chr3:2600130-2601907 FORWARD LENGTH=236 230 4e-61
>AT4G11150.1 | chr4:6800091-6801696 FORWARD LENGTH=231
Length = 230
Score = 275 bits (702), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/230 (58%), Positives = 168/230 (73%)
Query: 2 MNDGDVARQLKQMTDFIRXXXXXXXXXXXXXXXXXXXXXXLQLVEAEKKRIRLEFERNEK 61
MNDGDV+RQ++QM FIR LQLVEAEKK+IR ++E+ EK
Sbjct: 1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60
Query: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Q D++KKI+YS QLNASR++VLQAQDD+ +M + A K+LL ++RD + YK LL+ IVQ
Sbjct: 61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120
Query: 122 SLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHYE 181
LLRLKEP+V+LRCR+ED LVE+VL+ AK EYA KA ++ PE+ VD ++LPP P +
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180
Query: 182 AHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLGQVAA 231
HG CSGGVVLASRDGKIVCENTLDARL+V FR KLP IR+SL GQV A
Sbjct: 181 PHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230
>AT1G64200.1 | chr1:23828537-23830002 REVERSE LENGTH=238
Length = 237
Score = 270 bits (689), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 135/236 (57%), Positives = 169/236 (71%), Gaps = 6/236 (2%)
Query: 2 MNDGDVARQLKQMTDFIRXXXXXXXXXXXXXXXXXXXXXXLQLVEAEKKRIRLEFERNEK 61
MND D + Q++QM FIR LQLVEAEKK+IR E+E+ EK
Sbjct: 1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELL------YITRDHHVYKNLL 115
Q D++KKI+YS QLNASR++VLQAQDD+ +M E A K+LL + HH YK+LL
Sbjct: 61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120
Query: 116 RIFIVQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPP 175
+ IVQ LLRLKEPAV+LRCR+ED ++VES+L+ A EY KA ++ PEI+VD++++LPP
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180
Query: 176 APSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLGQVAA 231
APS + H SC+GGVVLASRDGKIVCENTLDARLEV FR KLPEIR+SL G+V A
Sbjct: 181 APSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236
>AT3G08560.1 | chr3:2600130-2601907 FORWARD LENGTH=236
Length = 235
Score = 230 bits (587), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 164/228 (71%), Gaps = 2/228 (0%)
Query: 2 MNDGDVARQLKQMTDFIRXXXXXXXXXXXXXXXXXXXXXXLQLVEAEKKRIRLEFERNEK 61
MND DV++Q++QM FIR LQL+E+ K+++R +++R K
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60
Query: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Q DI+K+I+YS QLNASR++ LQAQDD+ +M ++A K+LL ++ D + YK LL+ I++
Sbjct: 61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120
Query: 122 SLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVY--LPPAPSH 179
SLLRLKEP+V+LRCR+ D+++VESV+E AK +YA+KA + P+I +D V+ PP P
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180
Query: 180 YEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRRSLLG 227
++H P CSGGVVLAS+DGKIVCENTLDARL+V FR+KLP+IR L+G
Sbjct: 181 PDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLVG 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,151,943
Number of extensions: 152801
Number of successful extensions: 573
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 3
Length of query: 231
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 136
Effective length of database: 8,502,049
Effective search space: 1156278664
Effective search space used: 1156278664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)