BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0217800 Os01g0217800|AK100463
(428 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53280.1 | chr1:19864942-19867341 REVERSE LENGTH=439 456 e-129
AT3G14990.1 | chr3:5047510-5049621 FORWARD LENGTH=393 409 e-114
AT4G34020.1 | chr4:16298553-16300897 REVERSE LENGTH=473 305 2e-83
>AT1G53280.1 | chr1:19864942-19867341 REVERSE LENGTH=439
Length = 438
Score = 456 bits (1174), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/388 (58%), Positives = 286/388 (73%), Gaps = 6/388 (1%)
Query: 36 KRVLVPVADGTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRV 95
K+VL+PVA GTEP EA DVL R GA VTVA+ + + V+A G+K+VAD +
Sbjct: 53 KKVLIPVAHGTEPFEAVVMIDVLRRGGADVTVASVE-----NQVGVDACHGIKMVADTLL 107
Query: 96 ADLEGEAFDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWGLL 155
+D+ FDLI LPGG+PG L++CK LEKMVKKQ G L AAIC PA+ WGLL
Sbjct: 108 SDITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLL 167
Query: 156 KGLKATCYPSFMEKFTAEIIPVNSRVVVDRNAVTSQGPATAIEYALALVEQLYGKEKSEE 215
+G KATCYP FMEK A V SRV +D VTS+GP T +E+++ LVEQL GKEK+ E
Sbjct: 168 EGKKATCYPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVE 227
Query: 216 VAGPLYVRPQPGVDYVIDEFNSVEWKCSGTPQVLVPVANGSEEMEALNLIDILRRAGANV 275
V+GPL +RP PG +Y I E N V W GTPQ+LVP+A+GSEEMEA+ +ID+L+RA ANV
Sbjct: 228 VSGPLVMRPNPGDEYTITELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVLKRAKANV 287
Query: 276 TVASVEDKLQVVTRRHKFNLIADIMVEEAAKREFDLIVMPGGLPGAQKLSSTKVLVDLLK 335
VA++ + L+VV R K L+AD++++EA K +DLIV+PGGL GA+ +S++ LV++LK
Sbjct: 288 VVAALGNSLEVVASR-KVKLVADVLLDEAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLK 346
Query: 336 KQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHLLTDQSACDSRVVVDGNLITS 395
KQAESNKPYGAICASPA V EPHGLLKGKKAT+FP M LTDQS + RV+VDGNLITS
Sbjct: 347 KQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSKLTDQSHIEHRVLVDGNLITS 406
Query: 396 KAPGSATEFALAIVEKLFGREKAVSIAK 423
+ PG++ EFALAIVEK +GREK + ++K
Sbjct: 407 RGPGTSLEFALAIVEKFYGREKGLQLSK 434
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 123/186 (66%), Gaps = 2/186 (1%)
Query: 243 SGTPQVLVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVE 302
S T +VL+PVA+G+E EA+ +ID+LRR GA+VTVASVE+++ V H ++AD ++
Sbjct: 50 SSTKKVLIPVAHGTEPFEAVVMIDVLRRGGADVTVASVENQVG-VDACHGIKMVADTLLS 108
Query: 303 EAAKREFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLK 362
+ FDLI++PGGLPG + L + K L ++KKQ + AIC +PA GLL+
Sbjct: 109 DITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALAFGTWGLLE 168
Query: 363 GKKATSFPP-MAHLLTDQSACDSRVVVDGNLITSKAPGSATEFALAIVEKLFGREKAVSI 421
GKKAT +P M L +A +SRV +DG ++TS+ PG+ EF++ +VE+L G+EKAV +
Sbjct: 169 GKKATCYPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLLGKEKAVEV 228
Query: 422 AKELIF 427
+ L+
Sbjct: 229 SGPLVM 234
>AT3G14990.1 | chr3:5047510-5049621 FORWARD LENGTH=393
Length = 392
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/389 (54%), Positives = 281/389 (72%), Gaps = 7/389 (1%)
Query: 36 KRVLVPVADGTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRV 95
K VL+P+A GTEP+EA A VL R GA VTVA+ + + V+A G+K+VAD +
Sbjct: 6 KTVLIPIAHGTEPLEAVAMITVLRRGGADVTVASVETQ-----VGVDACHGIKMVADTLL 60
Query: 96 ADLEGEAFDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWGLL 155
+D+ FDLI LPGG+PG L++CK LE MVKKQ G L AAIC PA+ L WGLL
Sbjct: 61 SDITDSVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLL 120
Query: 156 KGLKATCYPSFMEKFTAEI-IPVNSRVVVDRNAVTSQGPATAIEYALALVEQLYGKEKSE 214
+G KAT YP FMEK A V SRV +D VTS+GP T IE+++ L+EQL+GKEK++
Sbjct: 121 EGKKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKAD 180
Query: 215 EVAGPLYVRPQPGVDYVIDEFNSVEWKCSGTPQVLVPVANGSEEMEALNLIDILRRAGAN 274
EV+ L +RP PG ++ E N W TPQ+LVP+A SEE+EA+ L+DILRRA AN
Sbjct: 181 EVSSILLLRPNPGEEFTFTELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKAN 240
Query: 275 VTVASVEDKLQVVTRRHKFNLIADIMVEEAAKREFDLIVMPGGLPGAQKLSSTKVLVDLL 334
V +A+V + L+V R K L+A+++++E A++ FDLIV+PGGL GAQ+ +S + LV++L
Sbjct: 241 VVIAAVGNSLEVEGSR-KAKLVAEVLLDEVAEKSFDLIVLPGGLNGAQRFASCEKLVNML 299
Query: 335 KKQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHLLTDQSACDSRVVVDGNLIT 394
+KQAE+NKPYG ICASPAYV EP+GLLKGKKAT+ P ++ L+D+S + RVVVDGN+IT
Sbjct: 300 RKQAEANKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDKLSDKSHIEHRVVVDGNVIT 359
Query: 395 SKAPGSATEFALAIVEKLFGREKAVSIAK 423
S+APG+A EF+LAIVEK +GREKA+ + K
Sbjct: 360 SRAPGTAMEFSLAIVEKFYGREKALQLGK 388
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 123/187 (65%), Gaps = 3/187 (1%)
Query: 243 SGTPQVLVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVE 302
S T VL+P+A+G+E +EA+ +I +LRR GA+VTVASVE ++ V H ++AD ++
Sbjct: 3 SFTKTVLIPIAHGTEPLEAVAMITVLRRGGADVTVASVETQVGV-DACHGIKMVADTLLS 61
Query: 303 EAAKREFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLK 362
+ FDLIV+PGGLPG + L + K L +++KKQ + AIC +PA L GLL+
Sbjct: 62 DITDSVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLE 121
Query: 363 GKKATSFPPMAHLL--TDQSACDSRVVVDGNLITSKAPGSATEFALAIVEKLFGREKAVS 420
GKKAT +P L T +A +SRV +DG ++TS+ PG+ EF++ ++E+LFG+EKA
Sbjct: 122 GKKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADE 181
Query: 421 IAKELIF 427
++ L+
Sbjct: 182 VSSILLL 188
>AT4G34020.1 | chr4:16298553-16300897 REVERSE LENGTH=473
Length = 472
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 252/397 (63%), Gaps = 20/397 (5%)
Query: 36 KRVLVPVADGTEPVEAAATADVLNRAGARVTVATADPAGDDRGLLVEAAFGVKLVADGRV 95
K+VLVP+ GTE +EA DVL RAGA VTVA+ + + L VE + G +L+AD +
Sbjct: 84 KKVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVE-----QKLEVEGSSGTRLLADVLI 138
Query: 96 ADLEGEAFDLIALPGGMPGSANLRDCKVLEKMVKKQAEQGGLYAAICATPAVTLAHWGLL 155
+ + +DL+ALPGGMPG+ LRDC++LEK++K+QAE LY AI PA+TL WGLL
Sbjct: 139 SKCADQVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLL 198
Query: 156 KGLKATCYPSFMEKFTAEIIPVNSRVVVDRNAVTSQGPATAIEYALALVEQLYGKEKSEE 215
+ T +P+F K V + + + TS+GP T+ ++AL+L EQL+G+ ++
Sbjct: 199 TRKRTTGHPAFFGKLPT-FWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKS 257
Query: 216 VAGPLYVR-----PQPGVDYVIDEFNSVEWKCSGTPQVLVPVANGSEEMEALNLIDILRR 270
+ L +R P+ EFNS++W TP+VL+PVANGSE +E +++ D+LRR
Sbjct: 258 IEEFLLLRDGYQNPKN------KEFNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRR 311
Query: 271 AGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAKREFDLIVMPGGLPGAQKLSSTKVL 330
A +VTV+SVE L+ +T +I D ++ EAA+ +DLI++PGG G+++L +K+L
Sbjct: 312 AKVDVTVSSVERSLR-ITAFQGTKIITDKLIGEAAESSYDLIILPGGHTGSERLQKSKIL 370
Query: 331 VDLLKKQAESNKPYGAICASPAYVLEPHGLLKGKKATSFPPMAHLLTDQSACD-SRVVVD 389
LL++Q ES + YGA +S + VL HGLLK K+ T +P + +Q + + VV+D
Sbjct: 371 KKLLREQHESGRIYGATNSS-STVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVID 429
Query: 390 GNLITSKAPGSATEFALAIVEKLFGREKAVSIAKELI 426
GN+ITS + T+F+LAIV KLFG +A S+++ L+
Sbjct: 430 GNVITSLGLATVTKFSLAIVSKLFGHARARSVSEGLV 466
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 119/183 (65%), Gaps = 1/183 (0%)
Query: 245 TPQVLVPVANGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEA 304
T +VLVP+ G+EE+EA+ L+D+LRRAGA+VTVASVE KL+V L+AD+++ +
Sbjct: 83 TKKVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQKLEV-EGSSGTRLLADVLISKC 141
Query: 305 AKREFDLIVMPGGLPGAQKLSSTKVLVDLLKKQAESNKPYGAICASPAYVLEPHGLLKGK 364
A + +DL+ +PGG+PGA +L ++L ++K+QAE + YGAI +PA L P GLL K
Sbjct: 142 ADQVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPWGLLTRK 201
Query: 365 KATSFPPMAHLLTDQSACDSRVVVDGNLITSKAPGSATEFALAIVEKLFGREKAVSIAKE 424
+ T P L A + + + G L TS+ PG++ +FAL++ E+LFG A SI +
Sbjct: 202 RTTGHPAFFGKLPTFWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETTAKSIEEF 261
Query: 425 LIF 427
L+
Sbjct: 262 LLL 264
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,102,385
Number of extensions: 329502
Number of successful extensions: 721
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 6
Length of query: 428
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 327
Effective length of database: 8,337,553
Effective search space: 2726379831
Effective search space used: 2726379831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)