BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0217500 Os01g0217500|AK063270
(395 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53280.1 | chr1:19864942-19867341 REVERSE LENGTH=439 298 4e-81
AT3G14990.1 | chr3:5047510-5049621 FORWARD LENGTH=393 262 2e-70
AT4G34020.1 | chr4:16298553-16300897 REVERSE LENGTH=473 243 1e-64
>AT1G53280.1 | chr1:19864942-19867341 REVERSE LENGTH=439
Length = 438
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 172/405 (42%), Positives = 242/405 (59%), Gaps = 23/405 (5%)
Query: 1 MAAQASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIV 60
++A S TKKVL+P+ GTEP EA V IDVLRR GADVTVAS ++ ++ V+ +G+++V
Sbjct: 44 ISATMSSSTKKVLIPVAHGTEPFEAVVMIDVLRRGGADVTVASVEN-QVGVDACHGIKMV 102
Query: 61 ADALVAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXX 120
AD L++ D + FDLI+LPGG+PG L C LE MV++ G L
Sbjct: 103 ADTLLS--DITDSVFDLIMLPGGLPGGETLKNCKPLEKMVKKQDTDGRLNAAICCAPALA 160
Query: 121 XXSWGMLNGLKATAHPLFVDKFPPEXXXXXXXXXXXXXXXTSRGPATSTEFALALVEQLY 180
+WG+L G KAT +P+F++K TSRGP T+ EF++ LVEQL
Sbjct: 161 FGTWGLLEGKKATCYPVFMEKLAACATAVESRVEIDGKIVTSRGPGTTMEFSVTLVEQLL 220
Query: 181 SKNKAEQIAKEMLVRYDAG--YTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIXXX 238
K KA +++ +++R + G YTI E+N V W GTP++LVP+A+G+EEME + II
Sbjct: 221 GKEKAVEVSGPLVMRPNPGDEYTITELNQVSWSFEGTPQILVPIADGSEEMEAVAIIDVL 280
Query: 239 XXXXXXXXXXXXENAGVEIVARHGMRIVXXXXXXXXXXXXXXSSFDLIILPGGTPGAKTM 298
N+ +E+VA +++V +S+DLI+LPGG GA+
Sbjct: 281 KRAKANVVVAALGNS-LEVVASRKVKLVADVLLDEAEK----NSYDLIVLPGGLGGAEAF 335
Query: 299 SSNEKLVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKA----------ADQDGGDE 348
+S+EKLV +LKKQA ++KPYGAI A+ A V EPHGLL+GKKA DQ
Sbjct: 336 ASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLKGKKATAFPAMCSKLTDQ---SH 392
Query: 349 CESRVVVDGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLL 393
E RV+VDGN+ITS G GT++EFA+A VEK GR+ ++++ L
Sbjct: 393 IEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQLSKATL 437
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
Query: 9 TKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGG 68
T ++LVPI G+E +EA IDVL+RA A+V VA+ + L V V++VAD L+
Sbjct: 257 TPQILVPIADGSEEMEAVAIIDVLKRAKANVVVAALGNS-LEVVASRKVKLVADVLL--D 313
Query: 69 DCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXXXXSWGMLN 128
+ +DLIVLPGG+ GA L M+++ A + Y G+L
Sbjct: 314 EAEKNSYDLIVLPGGLGGAEAFASSEKLVNMLKKQAESNKPYGAICASPALVFEPHGLLK 373
Query: 129 GLKATAHPLFVDKFPPEXXXXXXXXXXXXXXXTSRGPATSTEFALALVEQLYSKNKAEQI 188
G KATA P K + TSRGP TS EFALA+VE+ Y + K Q+
Sbjct: 374 GKKATAFPAMCSKLT-DQSHIEHRVLVDGNLITSRGPGTSLEFALAIVEKFYGREKGLQL 432
Query: 189 AKEMLV 194
+K LV
Sbjct: 433 SKATLV 438
>AT3G14990.1 | chr3:5047510-5049621 FORWARD LENGTH=393
Length = 392
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/395 (40%), Positives = 226/395 (57%), Gaps = 18/395 (4%)
Query: 9 TKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGG 68
TK VL+PI GTEP+EA I VLRR GADVTVAS + ++ V+ +G+++VAD L++
Sbjct: 5 TKTVLIPIAHGTEPLEAVAMITVLRRGGADVTVASVET-QVGVDACHGIKMVADTLLS-- 61
Query: 69 DCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXXXXSWGMLN 128
D + FDLIVLPGG+PG L C +LE MV++ + G L +WG+L
Sbjct: 62 DITDSVFDLIVLPGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLE 121
Query: 129 GLKATAHPLFVDKFPPEXXXXXXXXXXXX-XXXTSRGPATSTEFALALVEQLYSKNKAEQ 187
G KAT +P+F++K TSRGP T+ EF++ L+EQL+ K KA++
Sbjct: 122 GKKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADE 181
Query: 188 IAKEMLVRYDAG--YTIDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIXXXXXXXXXX 245
++ +L+R + G +T E+N W TP++LVP+A +EE+E I ++
Sbjct: 182 VSSILLLRPNPGEEFTFTELNQTNWSFEDTPQILVPIAEESEEIEAIALVDILRRAKANV 241
Query: 246 XXXXXENAGVEIVARHGMRIVXXXXXXXXXXXXXXSSFDLIILPGGTPGAKTMSSNEKLV 305
N+ +E+ ++V SFDLI+LPGG GA+ +S EKLV
Sbjct: 242 VIAAVGNS-LEVEGSRKAKLVAEVLLDEVAE----KSFDLIVLPGGLNGAQRFASCEKLV 296
Query: 306 TLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKAADQ-------DGGDECESRVVVDGN 358
+L+KQA A+KPYG I A+ A+V EP+GLL+GKKA E RVVVDGN
Sbjct: 297 NMLRKQAEANKPYGGICASPAYVFEPNGLLKGKKATTHPVVSDKLSDKSHIEHRVVVDGN 356
Query: 359 VITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLL 393
VITS GTAMEF++A VEK GR+ A ++ + L
Sbjct: 357 VITSRAPGTAMEFSLAIVEKFYGREKALQLGKATL 391
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 95/186 (51%), Gaps = 4/186 (2%)
Query: 9 TKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADALVAGG 68
T ++LVPI +E +EA +D+LRRA A+V +A+ + L VE ++VA+ L+
Sbjct: 211 TPQILVPIAEESEEIEAIALVDILRRAKANVVIAAVGNS-LEVEGSRKAKLVAEVLL--D 267
Query: 69 DCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXXXXSWGMLN 128
+ A FDLIVLPGG+ GA C L M+R+ A Y G+L
Sbjct: 268 EVAEKSFDLIVLPGGLNGAQRFASCEKLVNMLRKQAEANKPYGGICASPAYVFEPNGLLK 327
Query: 129 GLKATAHPLFVDKFPPEXXXXXXXXXXXXXXXTSRGPATSTEFALALVEQLYSKNKAEQI 188
G KAT HP+ DK + TSR P T+ EF+LA+VE+ Y + KA Q+
Sbjct: 328 GKKATTHPVVSDKLS-DKSHIEHRVVVDGNVITSRAPGTAMEFSLAIVEKFYGREKALQL 386
Query: 189 AKEMLV 194
K LV
Sbjct: 387 GKATLV 392
>AT4G34020.1 | chr4:16298553-16300897 REVERSE LENGTH=473
Length = 472
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 218/400 (54%), Gaps = 23/400 (5%)
Query: 5 ASPPTKKVLVPIVAGTEPVEAAVPIDVLRRAGADVTVASADDGELVVEVMYGVRIVADAL 64
+S TKKVLVPI GTE +EA V +DVLRRAGADVTVAS + +L VE G R++AD L
Sbjct: 79 SSATTKKVLVPIGYGTEEIEAVVLVDVLRRAGADVTVASVEQ-KLEVEGSSGTRLLADVL 137
Query: 65 VAGGDCAAAHFDLIVLPGGVPGAANLGGCAALEAMVRRHAATGGLYXXXXXXXXXXXXSW 124
++ CA +DL+ LPGG+PGA L C LE +++R A LY W
Sbjct: 138 IS--KCADQVYDLVALPGGMPGAVRLRDCEILEKIMKRQAEDKRLYGAISMAPAITLLPW 195
Query: 125 GMLNGLKATAHPLFVDKFPPEXXXXXXXXXXXXXXXTSRGPATSTEFALALVEQLYSKNK 184
G+L + T HP F K P TSRGP TS +FAL+L EQL+ +
Sbjct: 196 GLLTRKRTTGHPAFFGKLPT-FWAVKTNIQISGELTTSRGPGTSFQFALSLAEQLFGETT 254
Query: 185 AEQIAKEMLVRYDAGYT---IDEVNSVQWKCNGTPKVLVPVANGTEEMELITIIXXXXXX 241
A+ I + +L+R GY E NS+ W + TP+VL+PVANG+E +EL++I
Sbjct: 255 AKSIEEFLLLR--DGYQNPKNKEFNSIDWSLDHTPRVLIPVANGSEAVELVSIADVLRRA 312
Query: 242 XXXXXXXXXENAGVEIVARHGMRIVXXXXXXXXXXXXXXSSFDLIILPGGTPGAKTMSSN 301
E + + I A G +I+ SS+DLIILPGG G++ + +
Sbjct: 313 KVDVTVSSVERS-LRITAFQGTKII----TDKLIGEAAESSYDLIILPGGHTGSERLQKS 367
Query: 302 EKLVTLLKKQAAASKPYGAIGAATAHVLEPHGLLEGKKA------ADQDGGDEC--ESRV 353
+ L LL++Q + + YGA +++ VL HGLL+ K+ +D+ + + V
Sbjct: 368 KILKKLLREQHESGRIYGATNSSST-VLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEV 426
Query: 354 VVDGNVITSGGTGTAMEFAVAAVEKLLGRDVAQRVAEGLL 393
V+DGNVITS G T +F++A V KL G A+ V+EGL+
Sbjct: 427 VIDGNVITSLGLATVTKFSLAIVSKLFGHARARSVSEGLV 466
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,951,302
Number of extensions: 245899
Number of successful extensions: 572
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 5
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)